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Bibliometric analysis is essential for understanding research trends, scope, and impact in urban science, especially in high-impact journals, such Nature Portfolios. However, traditional methods, relying on keyword searches and basic NLP…

Digital Libraries · Computer Science 2024-10-15 Haowen Xu , Xueping Li , Jose Tupayachi , Jianming , Lian , Femi Omitaomu

Repetitive DNA (repeats) poses significant challenges for accurate and efficient genome assembly and sequence alignment. This is particularly true for metagenomic data, where genome dynamics such as horizontal gene transfer, gene…

Machine Learning · Computer Science 2024-02-15 Ali Azizpour , Advait Balaji , Todd J. Treangen , Santiago Segarra

Ethnic clothing is a vital carrier of cultural identity, yet its digital preservation often results in static displays that fail to convey deep cultural meaning or foster user engagement. Existing practices lack a systematic design…

Human-Computer Interaction · Computer Science 2025-11-10 Ma Xiaofan , Yan Lirong , Zhao Weijia , Zeng Weiping , Wu Huiyue

We introduce MiRAGE, an evaluation framework for retrieval-augmented generation (RAG) from multimodal sources. As audiovisual media becomes a prevalent source of information online, it is essential for RAG systems to integrate information…

Computation and Language · Computer Science 2025-10-30 Alexander Martin , William Walden , Reno Kriz , Dengjia Zhang , Kate Sanders , Eugene Yang , Chihsheng Jin , Benjamin Van Durme

Recent advances in Spatial Transcriptomics (ST) pair histology images with spatially resolved gene expression profiles, enabling predictions of gene expression across different tissue locations based on image patches. This opens up new…

Computer Vision and Pattern Recognition · Computer Science 2025-03-21 Aniruddha Ganguly , Debolina Chatterjee , Wentao Huang , Jie Zhang , Alisa Yurovsky , Travis Steele Johnson , Chao Chen

The objective assessment of human affective and psychological states presents a significant challenge, particularly through non-verbal channels. This paper introduces digital drawing as a rich and underexplored modality for affective…

Image-generation models are changing how we express ourselves in visual art. However, what people think of AI-generated art is still largely unexplored, especially compared to traditional art. In this paper, we present the design of an…

Human-Computer Interaction · Computer Science 2024-05-06 Peter Kun , Matthias Freiberger , Anders Sundnes Løvlie , Sebastian Risi

Current approaches for modeling discrete-valued outcomes associated with spatially-dependent areal units incur computational and theoretical challenges, especially in the Bayesian setting when full posterior inference is desired. As an…

Methodology · Statistics 2025-05-22 J. Brandon Carter , Catherine A. Calder

Temporal interaction graphs (TIGs), defined by sequences of timestamped interaction events, have become ubiquitous in real-world applications due to their capability to model complex dynamic system behaviors. As a result, temporal…

Machine Learning · Computer Science 2025-12-19 Pengfei Jiao , Hongjiang Chen , Xuan Guo , Zhidong Zhao , Dongxiao He , Di Jin

Humans understand long and complex texts by relying on a holistic semantic representation of the content. This global view helps organize prior knowledge, interpret new information, and integrate evidence dispersed across a document, as…

Computation and Language · Computer Science 2026-05-29 Yuqing Li , Jiangnan Li , Zheng Lin , Ziyan Zhou , Junjie Wu , Weiping Wang , Jie Zhou , Mo Yu

Retrieval-Augmented Generation (RAG) helps large language models (LLMs) answer knowledge-intensive and time-sensitive questions by conditioning generation on external evidence. However, most RAG systems still retrieve unstructured chunks…

Computation and Language · Computer Science 2026-03-11 Jiashuo Sun , Yixuan Xie , Jimeng Shi , Shaowen Wang , Jiawei Han

Graph data structures offer a versatile and powerful means to model relationships and interconnections in various domains, promising substantial advantages in data representation, analysis, and visualization. In games, graph-based data…

Machine Learning · Computer Science 2024-09-10 Florian Rupp , Kai Eckert

The substance of this paper is the description of the use of Retrieval-Augmented Generation (RAG) for specific digital collections of cultural assets. The collections are provided by institutions operating in the cultural sector. The…

Digital Libraries · Computer Science 2026-05-29 Andrea Scharnhorst , Han Yang , Jetze Touber , Kim Ferguson , Philipp Mayr , Vyacheslav Tykhonov

Graph neural networks (GNNs) have been broadly studied on dynamic graphs for their representation learning, majority of which focus on graphs with homogeneous structures in the spatial domain. However, many real-world graphs - i.e.,…

Machine Learning · Computer Science 2021-10-27 Yujie Fan , Mingxuan Ju , Chuxu Zhang , Liang Zhao , Yanfang Ye

This paper explores the interplay between statistics and generative artificial intelligence. Generative statistics, an integral part of the latter, aims to construct models that can generate efficiently and meaningfully new data across the…

Methodology · Statistics 2025-02-25 Bing Cheng , Howell Tong

Three-dimensional scene generation holds significant potential in gaming, film, and virtual reality. However, most existing methods adopt a single-step generation process, making it difficult to balance scene complexity with minimal user…

Computer Vision and Pattern Recognition · Computer Science 2025-11-03 Jiacheng Hong , Kunzhen Wu , Mingrui Yu , Yichao Gu , Shengze Xue , Shuangjiu Xiao , Deli Dong

Semantic segmentation of multi-source remote sensing images is a fundamental task for Earth observation applications. Existing methods often struggle with insufficient multi-scale context modeling and suboptimal cross-modal feature fusion,…

Computer Vision and Pattern Recognition · Computer Science 2026-05-19 Feng Gao , Zhilin Jin , Yanhai Gan , Junyu Dong , Qian Du

Introduction: Epigenomic datasets from high-throughput sequencing experiments are commonly summarized as genomic intervals. As the volume of this data grows, so does interest in analyzing it through deep learning. However, the heterogeneity…

Multi-modal Retrieval-Augmented Generation (RAG) has become a critical method for empowering LLMs by leveraging candidate visual documents. However, current methods consider the entire document as the basic retrieval unit, introducing…

Computer Vision and Pattern Recognition · Computer Science 2025-12-23 Yinglu Li , Zhiying Lu , Zhihang Liu , Yiwei Sun , Chuanbin Liu , Hongtao Xie

Scene graphs provide a rich, structured representation of a scene by encoding the entities (objects) and their spatial relationships in a graphical format. This representation has proven useful in several tasks, such as question answering,…

Computer Vision and Pattern Recognition · Computer Science 2022-12-01 Sanjoy Kundu , Sathyanarayanan N. Aakur