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A common theme in causal inference is learning causal relationships between observed variables, also known as causal discovery. This is usually a daunting task, given the large number of candidate causal graphs and the combinatorial nature…

Machine Learning · Statistics 2022-10-11 Romain Lopez , Jan-Christian Hütter , Jonathan K. Pritchard , Aviv Regev

We present a new method for linear and nonlinear, lagged and contemporaneous constraint-based causal discovery from observational time series in the presence of latent confounders. We show that existing causal discovery methods such as FCI…

Methodology · Statistics 2021-02-03 Andreas Gerhardus , Jakob Runge

Several causal discovery algorithms have been proposed. However, when the sample size is small relative to the number of variables, the accuracy of estimating causal graphs using existing methods decreases. And some methods are not feasible…

Machine Learning · Statistics 2025-10-06 Ming Cai , Hisayuki Hara

The PC and FCI algorithms are popular constraint-based methods for learning the structure of directed acyclic graphs (DAGs) in the absence and presence of latent and selection variables, respectively. These algorithms (and their…

Methodology · Statistics 2022-03-14 Shubhadeep Chakraborty , Ali Shojaie

Latent variables pose a fundamental challenge to causal discovery and inference. Conventional local methods focus on direct neighbors but fail to provide macro level insights. Cluster level methods enable macro causal reasoning but either…

Machine Learning · Computer Science 2026-04-27 Zongyu Li

Differentiable causal discovery has made significant advancements in the learning of directed acyclic graphs. However, its application to real-world datasets remains restricted due to the ubiquity of latent confounders and the requirement…

Machine Learning · Computer Science 2024-06-18 Pingchuan Ma , Rui Ding , Qiang Fu , Jiaru Zhang , Shuai Wang , Shi Han , Dongmei Zhang

Conditional independence tests (CIT) are widely used for causal discovery and feature selection. Even with false discovery rate (FDR) control procedures, they often fail to provide frequentist guarantees in practice. We highlight two common…

Methodology · Statistics 2026-02-25 Milleno Pan , Antoine de Mathelin , Wesley Tansey

Inferring causal structure from data is a challenging task of fundamental importance in science. Observational data are often insufficient to identify a system's causal structure uniquely. While conducting interventions (i.e., experiments)…

We study causal discovery from observational data in linear Gaussian systems affected by \emph{mixed latent confounding}, where some unobserved factors act broadly across many variables while others influence only small subsets. This…

Machine Learning · Computer Science 2026-01-01 Amir Asiaee , Samhita Pal , James O'quinn , James P. Long

Existing causal discovery methods based on combinatorial optimization or search are slow, prohibiting their application on large-scale datasets. In response, more recent methods attempt to address this limitation by formulating causal…

Machine Learning · Computer Science 2024-03-07 Victor Akinwande , J. Zico Kolter

Testing for conditional independence is a core aspect of constraint-based causal discovery. Although commonly used tests are perfect in theory, they often fail to reject independence in practice, especially when conditioning on multiple…

Machine Learning · Statistics 2019-03-13 Alexander Marx , Jilles Vreeken

Causal thinking enables humans to understand not just what is seen, but why it happens. To replicate this capability in modern AI systems, we introduce the task of visual causal discovery. It requires models to infer cause-and-effect…

Computer Vision and Pattern Recognition · Computer Science 2025-12-02 Yize Zhang , Meiqi Chen , Sirui Chen , Bo Peng , Yanxi Zhang , Tianyu Li , Chaochao Lu

Discovering pure causes or driver variables in deterministic LTI systems is of vital importance in the data-driven reconstruction of causal networks. A recent work by Kathari and Tangirala, proposed in 2022, formulated the causal discovery…

Machine Learning · Computer Science 2025-06-26 Bala Rajesh Konkathi , Arun K. Tangirala

Chain-of-Thought (CoT) reasoning has advanced the capabilities and transparency of language models (LMs); however, reasoning chains can contain inaccurate statements that reduce performance and trustworthiness. To address this, we propose…

Machine Learning · Computer Science 2026-02-18 Minsu Kim , Jean-Pierre Falet , Oliver E. Richardson , Xiaoyin Chen , Moksh Jain , Sungjin Ahn , Sungsoo Ahn , Yoshua Bengio

Various unsupervised greedy selection methods have been proposed as computationally tractable approximations to the NP-hard subset selection problem. These methods rely on sequentially selecting the variables that best improve performance…

Machine Learning · Computer Science 2025-02-18 Federico Zocco , Marco Maggipinto , Gian Antonio Susto , Seán McLoone

For a given causal question, it is important to efficiently decide which causal inference method to use for a given dataset. This is challenging because causal methods typically rely on complex and difficult-to-verify assumptions, and…

Machine Learning · Computer Science 2023-11-09 Shantanu Gupta , Cheng Zhang , Agrin Hilmkil

We consider linear structural equation models with explicitly modelled latent variables. In such models, observed and latent variables solve linear equations including stochastic noise terms. The goal of our work is to identify the direct…

Methodology · Statistics 2026-05-28 Tom Hochsprung , Nils Sturma , Jakob Runge , Mathias Drton , Andreas Gerhardus

Discovering causal relationships from observational data, particularly in the presence of latent variables, poses a challenging problem. While current local structure learning methods have proven effective and efficient when the focus lies…

Machine Learning · Computer Science 2024-06-07 Feng Xie , Zheng Li , Peng Wu , Yan Zeng , Chunchen Liu , Zhi Geng

Many of the causal discovery methods rely on the faithfulness assumption to guarantee asymptotic correctness. However, the assumption can be approximately violated in many ways, leading to sub-optimal solutions. Although there is a line of…

Machine Learning · Computer Science 2022-01-19 Ignavier Ng , Yujia Zheng , Jiji Zhang , Kun Zhang

Causal inference methods based on conditional independence construct Markov equivalent graphs, and cannot be applied to bivariate cases. The approaches based on independence of cause and mechanism state, on the contrary, that causal…

Machine Learning · Computer Science 2021-08-04 Nataliya Sokolovska , Pierre-Henri Wuillemin
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