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Collective movements are pervasive behaviours among social organisms and have led to the development of many models. However, modelling animal trajectories and social interactions in simple bounded environments remains a challenge.…

Neurons and Cognition · Quantitative Biology 2018-11-28 Leo Cazenille , Nicolas Bredeche , José Halloy

An effective evasion strategy allows prey to survive encounters with predators. Prey are generally thought to escape in a direction that is either random or serves to maximize the minimum distance from the predator. Here we introduce a…

Quantitative Methods · Quantitative Biology 2023-02-22 Yusheng Jiao , Brendan Colvert , Yi Man , Matthew J. McHenry , Eva Kanso

Swimming organisms can escape their predators by creating and harnessing unsteady flow fields through their body motions. Stochastic optimization and flow simulations have identified escape patterns that are consistent with those observed…

Fluid Dynamics · Physics 2021-09-29 Ioannis Mandralis , Pascal Weber , Guido Novati , Petros Koumoutsakos

Animal vision is thought to optimize various objectives from metabolic efficiency to discrimination performance, yet its ultimate objective is to facilitate the survival of the animal within its ecological niche. However, modeling animal…

Neural and Evolutionary Computing · Computer Science 2024-02-09 Sacha Sokoloski , Jure Majnik , Philipp Berens

Patch foraging is one of the most heavily studied behavioral optimization challenges in biology. However, despite its importance to biological intelligence, this behavioral optimization problem is understudied in artificial intelligence…

Artificial Intelligence · Computer Science 2023-04-24 Nathan J. Wispinski , Andrew Butcher , Kory W. Mathewson , Craig S. Chapman , Matthew M. Botvinick , Patrick M. Pilarski

Larval zebrafish exhibit a variety of complex undulatory swimming patterns. This repertoire is controlled by the 300 neurons projecting from brain into spinal cord. Understanding how descending control signals shape the output of spinal…

Neurons and Cognition · Quantitative Biology 2007-05-23 Scott A. Hill , Xiao-Ping Liu , Melissa A. Borla , Jorge V. Jose , Donald M. O'Malley

Animals chain movements into long-lived motor strategies, exhibiting variability across scales that reflects the interplay between internal states and environmental cues. To reveal structure in such variability, we build Markov models of…

In this report, we introduce a novel self-supervised learning method for extracting latent embeddings from behaviors of larval zebrafish. Drawing inspiration from Masked Modeling techniquesutilized in image processing with Masked…

Computer Vision and Pattern Recognition · Computer Science 2024-03-26 Lanxin Xu , Shuo Wang

Homing and navigation are fundamental behaviors in biological systems that enable agents to reliably reach a target under uncertainty. We present a Reinforcement Learning (RL) framework to model adaptive homing in continuous two-dimensional…

Soft Condensed Matter · Physics 2026-02-10 Riya Singh , Pratikshya Jena , Anish Kumar , Shradha Mishra

We develop a deep reinforcement learning framework for controlling a bio-inspired jellyfish swimmer to navigate complex fluid environments with obstacles. While existing methods often rely on kinematic and geometric states, a key challenge…

Fluid Dynamics · Physics 2025-11-07 Yihao Chen , Yue Yang

The tracing of neural pathways through large volumes of image data is an incredibly tedious and time-consuming process that significantly encumbers progress in neuroscience. We are exploring deep learning's potential to automate…

Computer Vision and Pattern Recognition · Computer Science 2018-09-05 Ishtar Nyawira , Kristi Bushman , Iris Qian , Annie Zhang

Reinforcement Learning is an area of Machine Learning focused on how agents can be trained to make sequential decisions, and achieve a particular goal within an arbitrary environment. While learning, they repeatedly take actions based on…

Deep reinforcement learning is a technique for solving problems in a variety of environments, ranging from Atari video games to stock trading. This method leverages deep neural network models to make decisions based on observations of a…

Machine Learning · Computer Science 2022-09-13 Anthony Dowling

Weakly electric fish, like Gnathonemus petersii, use a remarkable electrical modality for active sensing and communication, but studying their rich electrosensing and electrocommunication behavior and associated neural activity in…

Reinforcement learning (RL) is a flexible and efficient method for programming micro-robots in complex environments. Here we investigate whether reinforcement learning can provide insights into biological systems when trained to perform…

Biological Physics · Physics 2024-04-03 Samuel Tovey , Christoph Lohrmann , Christian Holm

This study investigates a method to guide and control fish schools using virtual fish trained with reinforcement learning. We utilize 2D virtual fish displayed on a screen to overcome technical challenges such as durability and movement…

Robotics · Computer Science 2026-03-18 Yusuke Nishii , Hiroaki Kawashima

Neural dynamics underlie behaviors from memory to sleep, yet identifying mechanisms for higher-order phenomena (e.g., social interaction) is experimentally challenging. Existing whole-brain models often fail to scale to single-neuron…

Neurons and Cognition · Quantitative Biology 2025-11-03 Sam Fatehmanesh Vegas , Matt Thomson , James Gornet , David Prober

Navigation is a complex skill with a long history of research in animals and humans. In this work, we simulate the Morris Water Maze in 2D to train deep reinforcement learning agents. We perform automatic classification of navigation…

Machine Learning · Computer Science 2023-11-09 Andrew Liu , Alla Borisyuk

Collective motion is one of the most ubiquitous behaviours displayed by social organisms and has led to the development of numerous models. Recent advances in the understanding of sensory system and information processing by animals impel…

Biological Physics · Physics 2016-01-28 Bertrand Collignon , Axel Séguret , José Halloy

Target-driven visual navigation is a challenging problem that requires a robot to find the goal using only visual inputs. Many researchers have demonstrated promising results using deep reinforcement learning (deep RL) on various robotic…

Robotics · Computer Science 2021-06-08 Qian Luo , Maks Sorokin , Sehoon Ha
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