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The reconstruction of large phylogenetic trees from data that violates clocklike evolution (or as a supertree constructed from any m input trees) raises a difficult question for biologists - how can one assign relative dates to the vertices…

Combinatorics · Mathematics 2007-05-23 Tanja Gernhard , Daniel Ford , Rutger Vos , Mike Steel

We enumerate several classes of pattern-avoiding rectangulations. We establish new bijective links with pattern-avoiding permutations, prove that their generating functions are algebraic, and confirm several conjectures by Merino and…

Discrete Mathematics · Computer Science 2024-04-02 Andrei Asinowski , Cyril Banderier

In 1995, the first author introduced a multivariate generating function {$G$} that tracks the distribution of ascents and descents in labeled binary trees. In addition to proving that $G$ is symmetric, he conjectured that $G$ is Schur…

Combinatorics · Mathematics 2019-09-30 Ira M. Gessel , Sean T. Griffin , Vasu Tewari

This article presents unified bijective constructions for planar maps, with control on the face degrees and on the girth. Recall that the girth is the length of the smallest cycle, so that maps of girth at least $d=1,2,3$ are respectively…

Combinatorics · Mathematics 2012-06-13 Olivier Bernardi , Eric Fusy

This article presents a unified bijective scheme between planar maps and blossoming trees, where a blossoming tree is defined as a spanning tree of the map decorated with some dangling half-edges that enable to reconstruct its faces. Our…

Combinatorics · Mathematics 2015-07-27 Marie Albenque , Dominique Poulalhon

The active bijection forms a package of results studied by the authors in a series of papers in oriented matroids. The present paper is intended to state the main results in the particular case, and more widespread language, of graphs. We…

Combinatorics · Mathematics 2018-07-19 Emeric Gioan , Michel Las Vergnas

This work revisits the Euclidean Dynamical Triangulation (DT) approach to non-perturbative quantum gravity in three dimensions. Inspired by a recent combinatorial study by T. Budd and L. Lionni of a subclass of 3-sphere triangulations…

High Energy Physics - Lattice · Physics 2025-09-26 Timothy Budd , Dániel Németh

Binary trees are fundamental objects in models of evolutionary biology and population genetics. Here, we discuss some of their combinatorial and structural properties as they depend on the tree class considered. Furthermore, the process by…

Populations and Evolution · Quantitative Biology 2021-06-30 Thomas Wiehe

We consider a weighted counting problem on matchings, denoted $\textrm{PrMatching}(\mathcal{G})$, on an arbitrary fixed graph family $\mathcal{G}$. The input consists of a graph $G\in \mathcal{G}$ and of rational probabilities of existence…

Computational Complexity · Computer Science 2023-01-10 Antoine Amarilli , Mikaël Monet

We give a Cayley type formula to count the number of spanning trees in the complete r-uniform hypergraph for all r >= 3. Similar to the bijection between spanning trees in complete graphs and Parking functions, we derive a bijection from…

Combinatorics · Mathematics 2007-05-23 Sivaramakrishnan Sivasubramanian

We present bijections enumerating (k,m)-trees, k-gon trees, edge labelled (2,1)-trees, and other tree-like structures. Our constructions are based on Foata's (1971) bijection for cycle-free functions, which is simplified here.

Combinatorics · Mathematics 2007-05-23 Oleg Pikhurko

We propose a new arithmetic for non-empty rooted unordered trees simply called trees. After discussing tree representation and enumeration, we define the operations of tree addition, multiplication and stretch, prove their properties, and…

Discrete Mathematics · Computer Science 2016-02-02 Fabrizio Luccio

In 1980, G. Kreweras gave a recursive bijection between forests and parking functions. In this paper we construct a nonrecursive bijection from forests onto parking functions, which answers a question raised by R. Stanley. As a by-product,…

Combinatorics · Mathematics 2008-10-03 Heesung Shin

Tiered trees were introduced as a combinatorial object for counting absolutely indecomposable representation of certain quivers and torus orbit of certain homogeneous variety. In this paper, we define a bijection between the set of…

Combinatorics · Mathematics 2024-08-07 Biswadeep Bagchi , Srinibas Swain

We show new bijective proofs of previously known formulas for the number of regions of some deformations of the braid arrangement, by means of a bijection between the no-broken-circuit sets of the corresponding integral gain graphs and some…

Combinatorics · Mathematics 2014-08-26 Sylvie Corteel , David Forge , Véronique Ventos

A compacted binary tree is a graph created from a binary tree such that repeatedly occurring subtrees in the original tree are represented by pointers to existing ones, and hence every subtree is unique. Such representations form a special…

Combinatorics · Mathematics 2022-03-10 Antoine Genitrini , Bernhard Gittenberger , Manuel Kauers , Michael Wallner

We introduce bud generating systems, which are used for combinatorial generation. They specify sets of various kinds of combinatorial objects, called languages. They can emulate context-free grammars, regular tree grammars, and synchronous…

Combinatorics · Mathematics 2019-03-12 Samuele Giraudo

Baxter permutations are known to be in bijection with a wide number of combinatorial objects. Previously, it was shown that each of these objects had a natural involution which was carried equivariantly by the known bijections, and the…

Combinatorics · Mathematics 2017-10-20 Kevin Dilks

We develop a new bijective framework for the enumeration of bipartite planar maps with control on the degree distribution of black and white vertices. Our approach builds on the blossoming-tree paradigm, introducing a family of orientations…

Combinatorics · Mathematics 2025-11-07 Marie Albenque , Laurent Ménard , Nicolas Tokka

Accessibility percolation is a new type of percolation problem inspired by evolutionary biology. To each vertex of a graph a random number is assigned and a path through the graph is called accessible if all numbers along the path are in…

Statistical Mechanics · Physics 2013-04-04 Stefan Nowak , Joachim Krug