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Current large language models (LLMs) can exhibit near-human levels of performance on many natural language tasks, including open-domain question answering. Unfortunately, they also convincingly hallucinate incorrect answers, so that…

Information Retrieval · Computer Science 2023-06-27 Siqing Huo , Negar Arabzadeh , Charles L. A. Clarke

Large language models (LLMs) have been touted to enable increased productivity in many areas of today's work life. Scientific research as an area of work is no exception: the potential of LLM-based tools to assist in the daily work of…

Software Engineering · Computer Science 2024-04-24 Mohamed Nejjar , Luca Zacharias , Fabian Stiehle , Ingo Weber

We demonstrate the ability of large language models (LLMs) to perform material and molecular property regression tasks, a significant deviation from the conventional LLM use case. We benchmark the Large Language Model Meta AI (LLaMA) 3 on…

Materials Science · Physics 2026-04-22 Ryan Jacobs , Maciej P. Polak , Lane E. Schultz , Hamed Mahdavi , Vasant Honavar , Dane Morgan

Chemical representation learning has gained increasing interest due to the limited availability of supervised data in fields such as drug and materials design. This interest particularly extends to chemical language representation learning,…

Chemical Physics · Physics 2024-08-06 Jun-Hyung Park , Yeachan Kim , Mingyu Lee , Hyuntae Park , SangKeun Lee

Modeling subrational agents, such as humans or economic households, is inherently challenging due to the difficulty in calibrating reinforcement learning models or collecting data that involves human subjects. Existing work highlights the…

Artificial Intelligence · Computer Science 2024-02-15 Andrea Coletta , Kshama Dwarakanath , Penghang Liu , Svitlana Vyetrenko , Tucker Balch

Large Language Models (LLMs) have emerged as a transformative AI paradigm, profoundly influencing daily life through their exceptional language understanding and contextual generation capabilities. Despite their remarkable performance, LLMs…

Artificial Intelligence · Computer Science 2024-12-10 Yedi Zhang , Yufan Cai , Xinyue Zuo , Xiaokun Luan , Kailong Wang , Zhe Hou , Yifan Zhang , Zhiyuan Wei , Meng Sun , Jun Sun , Jing Sun , Jin Song Dong

A drug molecule is a substance that changes the organism's mental or physical state. Every approved drug has an indication, which refers to the therapeutic use of that drug for treating a particular medical condition. While the Large…

Artificial Intelligence · Computer Science 2024-02-20 David Oniani , Jordan Hilsman , Chengxi Zang , Junmei Wang , Lianjin Cai , Jan Zawala , Yanshan Wang

Drug discovery can be viewed as a combinatorial search over an immense chemical space, motivating the development of deep generative models for de novo molecular design. Among these, GPT-based molecular language models (MLM) have shown…

Machine Learning · Computer Science 2026-02-02 Qianwei Yang , Dong Xu , Zhangfan Yang , Sisi Yuan , Zexuan Zhu , Jianqiang Li , Junkai Ji

The inverse design of molecules has challenged chemists for decades. In the past years, machine learning and artificial intelligence have emerged as new tools to generate molecules tailoring desired properties, but with the limit of relying…

Large Language Models (LLMs), with gradually improving reading comprehension and reasoning capabilities, are being applied to a range of complex language tasks, including the automatic generation of language data for various purposes.…

Computation and Language · Computer Science 2024-11-11 Long Truong To , Hung Tuan Le , Dat Van-Thanh Nguyen , Manh Trong Nguyen , Tri Thien Nguyen , Tin Van Huynh , Kiet Van Nguyen

Safety- and security-critical systems have to be thoroughly tested against their specifications. The state of practice is to have _natural language_ specifications, from which test cases are derived manually - a process that is slow,…

Software Engineering · Computer Science 2025-11-25 Kuangxiangzi Liu , Dhiman Chakraborty , Alexander Liggesmeyer , Andreas Zeller

Large Language Models (LLMs) often struggle with complex mathematical reasoning, where prose-based generation leads to unverified and arithmetically unsound solutions. Current prompting strategies like Chain of Thought still operate within…

Computation and Language · Computer Science 2026-01-27 Sina Bagheri Nezhad , Yao Li , Ameeta Agrawal

Providing effective feedback is important for student learning in programming problem-solving. In this sense, Large Language Models (LLMs) have emerged as potential tools to automate feedback generation. However, their reliability and…

Software Engineering · Computer Science 2025-03-20 Priscylla Silva , Evandro Costa

Recent studies have demonstrated the feasibility of modeling single-cell data as natural languages and the potential of leveraging powerful large language models (LLMs) for understanding cell biology. However, a comprehensive evaluation of…

Quantitative Methods · Quantitative Biology 2025-05-14 Fan Zhang , Tianyu Liu , Zhihong Zhu , Hao Wu , Haixin Wang , Donghao Zhou , Yefeng Zheng , Kun Wang , Xian Wu , Pheng-Ann Heng

Large Language Models (LLMs) often struggle with code generation tasks involving niche software libraries. Existing code generation techniques with only human-oriented documentation can fail -- even when the LLM has access to web search and…

Software Engineering · Computer Science 2025-05-09 Sandya Wijaya , Jacob Bolano , Alejandro Gomez Soteres , Shriyanshu Kode , Yue Huang , Anant Sahai

Factual hallucinations are a major challenge for Large Language Models (LLMs). They undermine reliability and user trust by generating inaccurate or fabricated content. Recent studies suggest that when generating false statements, the…

Computation and Language · Computer Science 2025-06-02 Giovanni Servedio , Alessandro De Bellis , Dario Di Palma , Vito Walter Anelli , Tommaso Di Noia

Neural networks are increasingly used to support decision-making. To verify their reliability and adaptability, researchers and practitioners have proposed a variety of tools and methods for tasks such as NN code verification, refactoring,…

Machine Learning · Computer Science 2026-02-05 Nadia Daoudi , Jordi Cabot

To collaborate effectively with humans, language models must be able to explain their decisions in natural language. We study a specific type of self-explanation: self-generated counterfactual explanations (SCEs), where a model explains its…

Machine Learning · Computer Science 2025-09-12 Harry Mayne , Ryan Othniel Kearns , Yushi Yang , Andrew M. Bean , Eoin Delaney , Chris Russell , Adam Mahdi

Large language models (LLMs) enable state-of-the-art semantic capabilities to be added to software systems such as semantic search of unstructured documents and text generation. However, these models are computationally expensive. At scale,…

Software Engineering · Computer Science 2024-01-17 Zafaryab Rasool , Scott Barnett , David Willie , Stefanus Kurniawan , Sherwin Balugo , Srikanth Thudumu , Mohamed Abdelrazek

Large Language Models (LLMs) such as GPT, LLaMA, and Claude achieve remarkable performance in text generation but remain opaque in their decision-making processes, limiting trust and accountability in high-stakes applications. We present…

Computation and Language · Computer Science 2025-10-22 Zeinab Dehghani , Mohammed Naveed Akram , Koorosh Aslansefat , Adil Khan , Yiannis Papadopoulos