English
Related papers

Related papers: Rotary Position Encodings for Graphs

200 papers

Length generalization is the ability of language models to maintain performance on inputs longer than those seen during pretraining. In this work, we introduce a simple yet powerful position encoding (PE) strategy, Random Float Sampling…

Machine Learning · Computer Science 2026-02-17 Atsushi Shimizu , Shohei Taniguchi , Yutaka Matsuo

Recurrent models have been dominating the field of neural machine translation (NMT) for the past few years. Transformers \citep{vaswani2017attention}, have radically changed it by proposing a novel architecture that relies on a feed-forward…

Computation and Language · Computer Science 2022-10-25 Joyce Zheng , Mehdi Rezagholizadeh , Peyman Passban

We propose a new class of linear Transformers called FourierLearner-Transformers (FLTs), which incorporate a wide range of relative positional encoding mechanisms (RPEs). These include regular RPE techniques applied for sequential data, as…

The development of effective explainability tools for Transformers is a crucial pursuit in deep learning research. One of the most promising approaches in this domain is Layer-wise Relevance Propagation (LRP), which propagates relevance…

Machine Learning · Computer Science 2025-06-04 Yarden Bakish , Itamar Zimerman , Hila Chefer , Lior Wolf

We identify intrinsic limitations of Rotary Positional Embeddings (RoPE) in Transformer-based long-context language models. Our theoretical analysis abstracts away from the specific content of the context and depends only on its length. We…

Computation and Language · Computer Science 2026-05-18 Yufeng Du , Phillip Harris , Minyang Tian , Eliu A Huerta , Srikanth Ronanki , Subendhu Rongali , Aram Galstyan , Hao Peng

Graph Transformers (GTs) facilitate the comprehension of graph-structured data by calculating the self-attention of node pairs without considering node position information. To address this limitation, we introduce an innovative and…

Machine Learning · Computer Science 2023-12-12 Kushal Bose , Swagatam Das

In Transformer-based architectures, the attention mechanism is inherently permutation-invariant with respect to the input sequence's tokens. To impose sequential order, token positions are typically encoded using a scheme with either fixed…

Machine Learning · Computer Science 2023-10-31 Giorgio Angelotti

Generative recommenders, typically transformer-based autoregressive models, predict the next item or action from a user's interaction history. Their effectiveness depends on how the model represents where an interaction event occurs in the…

Information Retrieval · Computer Science 2025-10-24 Xiaokai Wei , Jiajun Wu , Daiyao Yi , Reza Shirkavand , Michelle Gong

Several recent works use positional encodings to extend the receptive fields of graph neural network (GNN) layers equipped with attention mechanisms. These techniques, however, extend receptive fields to the complete graph, at substantial…

Machine Learning · Computer Science 2023-12-14 Rickard Brüel-Gabrielsson , Mikhail Yurochkin , Justin Solomon

Transformers were originally proposed as a sequence-to-sequence model for text but have become vital for a wide range of modalities, including images, audio, video, and undirected graphs. However, transformers for directed graphs are a…

Machine Learning · Computer Science 2023-09-01 Simon Geisler , Yujia Li , Daniel Mankowitz , Ali Taylan Cemgil , Stephan Günnemann , Cosmin Paduraru

The attention mechanism in a Transformer architecture matches key to query based on both content -- the what -- and position in a sequence -- the where. We present an analysis indicating that what and where are entangled in the popular RoPE…

Machine Learning · Computer Science 2025-12-24 Anand Gopalakrishnan , Robert Csordás , Jürgen Schmidhuber , Michael C. Mozer

There are several improvements proposed over the baseline Absolute Positional Encoding (APE) method used in original transformer. In this study, we aim to investigate the implications of inadequately representing positional encoding in…

Computation and Language · Computer Science 2024-05-09 Arpit Aggarwal

We present RL-VAE, a graph-to-graph variational autoencoder that uses reinforcement learning to decode molecular graphs from latent embeddings. Methods have been described previously for graph-to-graph autoencoding, but these approaches…

Machine Learning · Computer Science 2019-06-06 Steven Kearnes , Li Li , Patrick Riley

Sequential recommendation (SR), which encodes user activity to predict the next action, has emerged as a widely adopted strategy in developing commercial personalized recommendation systems. A critical component of modern SR models is the…

Information Retrieval · Computer Science 2025-02-25 Jun Yuan , Guohao Cai , Zhenhua Dong

A current goal in the graph neural network literature is to enable transformers to operate on graph-structured data, given their success on language and vision tasks. Since the transformer's original sinusoidal positional encodings (PEs)…

Machine Learning · Computer Science 2023-04-11 Patrick Soga , David Chiang

Graph transformers extend global self-attention to graph-structured data, achieving notable success in graph learning. Recently, random walk structural encoding (RWSE) has been found to further enhance their predictive power by encoding…

Machine Learning · Computer Science 2025-06-03 Louis Airale , Antonio Longa , Mattia Rigon , Andrea Passerini , Roberto Passerone

In transformers, the positional encoding (PE) provides essential information that distinguishes the position and order amongst tokens in a sequence. Most prior investigations of PE effects on generalization were tailored to 1D input…

Machine Learning · Computer Science 2025-06-24 Takuya Ito , Luca Cocchi , Tim Klinger , Parikshit Ram , Murray Campbell , Luke Hearne

Designing effective positional encodings for graphs is key to building powerful graph transformers and enhancing message-passing graph neural networks. Although widespread, using Laplacian eigenvectors as positional encodings faces two…

Machine Learning · Computer Science 2024-06-11 Yinan Huang , William Lu , Joshua Robinson , Yu Yang , Muhan Zhang , Stefanie Jegelka , Pan Li

Positional embeddings (PE) play a crucial role in Vision Transformers (ViTs) by providing spatial information otherwise lost due to the permutation invariant nature of self attention. While absolute positional embeddings (APE) have shown…

Computer Vision and Pattern Recognition · Computer Science 2026-04-14 Md Abtahi Majeed Chowdhury , Md Rifat Ur Rahman , Akil Ahmad Taki

Graph neural networks (GNNs) largely rely on the message-passing paradigm, where nodes iteratively aggregate information from their neighbors. Yet, standard message passing neural networks (MPNNs) face well-documented theoretical and…

Machine Learning · Computer Science 2026-05-15 Juan Amboage , Ernst Röell , Patrick Schnider , Bastian Rieck