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Graph Neural Networks (GNNs) are routinely used in molecular physics, social sciences, and economics to model many-body interactions in graph-like systems. However, GNNs are inherently local and can suffer from information flow bottlenecks.…

Computational Physics · Physics 2025-02-21 Alessandro Caruso , Jacopo Venturin , Lorenzo Giambagli , Edoardo Rolando , Frank Noé , Cecilia Clementi

Learning node representations that incorporate information from graph structure benefits wide range of tasks on graph. The majority of existing graph neural networks (GNNs) have limited power in capturing position information for a given…

Machine Learning · Computer Science 2021-06-15 Yuheng Lu , Jinpeng Chen , ChuXiong Sun , Jie Hu

We introduce a new way of learning to encode position information for non-recurrent models, such as Transformer models. Unlike RNN and LSTM, which contain inductive bias by loading the input tokens sequentially, non-recurrent models are…

Machine Learning · Computer Science 2020-03-23 Xuanqing Liu , Hsiang-Fu Yu , Inderjit Dhillon , Cho-Jui Hsieh

Learning the hierarchical structure of data in vision-language models is a significant challenge. Previous works have attempted to address this challenge by employing entailment learning. However, these approaches fail to model the…

Computer Vision and Pattern Recognition · Computer Science 2025-06-27 Srikumar Sastry , Aayush Dhakal , Eric Xing , Subash Khanal , Nathan Jacobs

The state-of-the-art coding schemes for topological interference management (TIM) problems are usually handcrafted for specific families of network topologies, relying critically on experts' domain knowledge. This inevitably restricts the…

Information Theory · Computer Science 2023-05-15 Zhiwei Shan , Xinping Yi , Han Yu , Chung-Shou Liao , Shi Jin

Transformer models are permutation equivariant. To supply the order and type information of the input tokens, position and segment embeddings are usually added to the input. Recent works proposed variations of positional encodings with…

Computation and Language · Computer Science 2021-11-04 Pu-Chin Chen , Henry Tsai , Srinadh Bhojanapalli , Hyung Won Chung , Yin-Wen Chang , Chun-Sung Ferng

Extending context window sizes allows large language models (LLMs) to process longer sequences and handle more complex tasks. Rotary Positional Embedding (RoPE) has become the de facto standard due to its relative positional encoding…

Computation and Language · Computer Science 2024-11-27 Haonan Wang , Qian Liu , Chao Du , Tongyao Zhu , Cunxiao Du , Kenji Kawaguchi , Tianyu Pang

Large Language Models (LLMs) are known to have limited extrapolation ability beyond their pre-trained context window, constraining their application in downstream tasks with lengthy inputs. Recent studies have sought to extend LLMs' context…

Computation and Language · Computer Science 2024-01-17 Yikai Zhang , Junlong Li , Pengfei Liu

Transformers flexibly operate over sets of real-valued vectors representing task-specific entities and their attributes, where each vector might encode one word-piece token and its position in a sequence, or some piece of information that…

Machine Learning · Computer Science 2023-03-14 Cameron Diao , Ricky Loynd

We introduce the variational graph auto-encoder (VGAE), a framework for unsupervised learning on graph-structured data based on the variational auto-encoder (VAE). This model makes use of latent variables and is capable of learning…

Machine Learning · Statistics 2016-11-23 Thomas N. Kipf , Max Welling

The ability to process ultra-long contexts is crucial for large language models (LLMs) to perform long-horizon tasks. While recent efforts have extended context windows to 1M and beyond, model performance degrades when sequence length…

Computation and Language · Computer Science 2026-05-28 Simin Huo

Attributed graph embedding, which learns vector representations from graph topology and node features, is a challenging task for graph analysis. Recently, methods based on graph convolutional networks (GCNs) have made great progress on this…

Machine Learning · Computer Science 2020-07-06 Ganqu Cui , Jie Zhou , Cheng Yang , Zhiyuan Liu

Implicit neural representation (INR) is a popular approach for arbitrary-scale image super-resolution (SR), as a key component of INR, position encoding improves its representation ability. Motivated by position encoding, we propose…

Computer Vision and Pattern Recognition · Computer Science 2023-03-03 Gaochao Song , Luo Zhang , Ran Su , Jianfeng Shi , Ying He , Qian Sun

Vision Transformers have demonstrated remarkable success in computer vision tasks, yet their reliance on learnable one-dimensional positional embeddings fundamentally disrupts the inherent two-dimensional spatial structure of images through…

Computer Vision and Pattern Recognition · Computer Science 2025-08-27 Zhihang Xin , Xitong Hu , Rui Wang

Spatiotemporal data faces many analogous challenges to natural language text including the ordering of locations (words) in a sequence, long range dependencies between locations, and locations having multiple meanings. In this work, we…

Machine Learning · Computer Science 2024-10-15 Athanasios Tsiligkaridis , Nicholas Kalinowski , Zhongheng Li , Elizabeth Hou

Addressing the limitation of context length in large language models for code-related tasks is the primary focus of this paper. Existing LLMs are constrained by their pre-trained context lengths, leading to performance issues in handling…

Software Engineering · Computer Science 2024-08-12 Kechi Zhang , Ge Li , Huangzhao Zhang , Zhi Jin

Recent advances in integrating positional and structural encodings (PSEs) into graph neural networks (GNNs) have significantly enhanced their performance across various graph learning tasks. However, the general applicability of these…

Machine Learning · Computer Science 2025-03-04 Billy Joe Franks , Moshe Eliasof , Semih Cantürk , Guy Wolf , Carola-Bibiane Schönlieb , Sophie Fellenz , Marius Kloft

Message passing graph neural networks are widely used for learning on graphs, yet their expressive power is limited by the one-dimensional Weisfeiler-Lehman test and can fail to distinguish structurally different nodes. We provide rigorous…

Machine Learning · Computer Science 2025-11-25 Zimo Yan , Zheng Xie , Chang Liu , Yuan Wang

Trajectory representation learning (TRL) aims to encode raw trajectory data into low-dimensional embeddings for downstream tasks such as travel time estimation, mobility prediction, and trajectory similarity analysis. From a behavioral…

Computer Vision and Pattern Recognition · Computer Science 2025-12-02 Ji Cao , Yu Wang , Tongya Zheng , Jie Song , Qinghong Guo , Zujie Ren , Canghong Jin , Gang Chen , Mingli Song

Auto-encoders have emerged as a successful framework for unsupervised learning. However, conventional auto-encoders are incapable of utilizing explicit relations in structured data. To take advantage of relations in graph-structured data,…

Machine Learning · Computer Science 2019-05-28 Amin Salehi , Hasan Davulcu
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