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FETI is a numerical method used to solve engineering problems. It builds on the ideas of domain decomposition, which makes it highly scalable and capable of efficiently utilizing whole supercomputers. One of the most time-consuming parts of…

Mathematical Software · Computer Science 2025-09-26 Jakub Homola , Radim Vavřík , Ondřej Meca , Tomáš Brzobohatý , Lubomír Říha

Sparse data structures are commonly used in neural networks to reduce the memory footprint. These data structures are compact but cause irregularities such as random memory accesses, which prevent efficient use of the memory hierarchy. GPUs…

Programming Languages · Computer Science 2025-06-19 Hossein Albakri , Kazem Cheshmi

The main objective of this work consists in analyzing sub-structuring method for the parallel solution of sparse linear systems with matrices arising from the discretization of partial differential equations such as finite element, finite…

Numerical Analysis · Mathematics 2021-08-31 Abal-Kassim Cheik Ahamed , Frédéric Magoulès

This paper introduces an efficient and generic framework for finite-element simulations under an implicit time integration scheme. Being compatible with generic constitutive models, a fast matrix assembly method exploits the fact that…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-06-12 Ziqiu Zeng , Hadrien Courtecuisse

In recent years, high performance scientific computing on graphics processing units (GPUs) have gained widespread acceptance. These devices are designed to offer massively parallel threads for running code with general purpose. There are…

Mathematical Software · Computer Science 2018-02-13 Tao Cui , Xiaohu Guo , Hui Liu

The solution of sparse symmetric positive definite linear systems is an important computational kernel in large-scale scientific and engineering modeling and simulation. We will solve the linear systems using a direct method, in which a…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-02-13 M. Ozan Karsavuran , Esmond G. Ng , Barry W. Peyton

This paper introduces sTiles, a GPU-accelerated framework for factorizing sparse structured symmetric matrices. By leveraging tile algorithms for fine-grained computations, sTiles uses a structure-aware task execution flow to handle…

Performance · Computer Science 2025-01-07 Esmail Abdul Fattah , Hatem Ltaief , Havard Rue , David Keyes

This paper presents a parallel preconditioning approach based on incomplete LU (ILU) factorizations in the framework of Domain Decomposition (DD) for general sparse linear systems. We focus on distributed memory parallel architectures,…

Numerical Analysis · Mathematics 2023-03-17 Tianshi Xu , Ruipeng Li , Daniel Osei-Kuffuor

We implement two novel algorithms for sparse-matrix dense-matrix multiplication (SpMM) on the GPU. Our algorithms expect the sparse input in the popular compressed-sparse-row (CSR) format and thus do not require expensive format conversion.…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-06-13 Carl Yang , Aydin Buluc , John D. Owens

General sparse matrix-matrix multiplication (SpGEMM) is a fundamental building block for numerous applications such as algebraic multigrid method (AMG), breadth first search and shortest path problem. Compared to other sparse BLAS routines,…

Mathematical Software · Computer Science 2015-09-15 Weifeng Liu , Brian Vinter

Matrix diagonalization is almost always involved in computing the density matrix needed in quantum chemistry calculations. In the case of modest matrix sizes ($\lesssim$ 5000), performance of traditional dense diagonalization algorithms on…

Chemical Physics · Physics 2023-06-23 Joshua Finkelstein , Christian F. A. Negre , Jean-Luc Fattebert

Scientific workloads have traditionally exploited high levels of sparsity to accelerate computation and reduce memory requirements. While deep neural networks can be made sparse, achieving practical speedups on GPUs is difficult because…

Machine Learning · Computer Science 2020-09-02 Trevor Gale , Matei Zaharia , Cliff Young , Erich Elsen

As neural network model sizes have dramatically increased, so has the interest in various techniques to reduce their parameter counts and accelerate their execution. An active area of research in this field is sparsity - encouraging zero…

Network pruning can reduce the high computation cost of deep neural network (DNN) models. However, to maintain their accuracies, sparse models often carry randomly-distributed weights, leading to irregular computations. Consequently, sparse…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-09-01 Cong Guo , Bo Yang Hsueh , Jingwen Leng , Yuxian Qiu , Yue Guan , Zehuan Wang , Xiaoying Jia , Xipeng Li , Minyi Guo , Yuhao Zhu

The importance of general matrix multiplication (GEMM) is motivating new instruction set extensions for multiplying dense matrices in almost all contemporary ISAs, and these extensions are often implemented using high-performance systolic…

Hardware Architecture · Computer Science 2025-02-18 Tuan Ta , Joshua Randall , Christopher Batten

The solution of a sparse system of linear equations is ubiquitous in scientific applications. Iterative methods, such as the Preconditioned Conjugate Gradient method (PCG), are normally chosen over direct methods due to memory and…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-03-04 Joshua Dennis Booth , Hongyang Sun , Trevor Garnett

In this paper, we use graphics processing units(GPU) to accelerate sparse and arbitrary structured neural networks. Sparse networks have nodes in the network that are not fully connected with nodes in preceding and following layers, and…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-05-12 Aavaas Gajurel , Sushil J. Louis , Frederick C Harris

Standard finite element methods employ an element-wise assembly strategy. The element's contribution to the system matrix is formed by a loop over quadrature points. This concept is also used in fictitious domain methods, which perform…

Computational Engineering, Finance, and Science · Computer Science 2023-08-29 Benjamin Marussig

Deep Learning (DL) acceleration support in CPUs has recently gained a lot of traction, with several companies (Arm, Intel, IBM) announcing products with specialized matrix engines accessible via GEMM instructions. CPUs are pervasive and…

We present a GPU-accelerated version of the real-space SPARC electronic structure code for performing Kohn-Sham density functional theory calculations within the local density and generalized gradient approximations. In particular, we…

Computational Physics · Physics 2023-06-14 Abhiraj Sharma , Alfredo Metere , Phanish Suryanarayana , Lucas Erlandson , Edmond Chow , John E. Pask
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