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The growing reliance on deep learning models in safety-critical domains such as healthcare and autonomous navigation underscores the need for defenses that are both robust to adversarial perturbations and transparent in their…

Machine Learning · Computer Science 2026-01-06 Longwei Wang , Mohammad Navid Nayyem , Abdullah Al Rakin , KC Santosh , Chaowei Zhang , Yang Zhou

Model-informed precision dosing (MIPD) using therapeutic drug/biomarker monitoring offers the opportunity to significantly improve the efficacy and safety of drug therapies. Current strategies comprise model-informed dosing tables or are…

Machine Learning · Statistics 2020-06-02 Corinna Maier , Niklas Hartung , Charlotte Kloft , Wilhelm Huisinga , Jana de Wiljes

Alzheimer's Disease Analysis Model (ADAM) is a multi-agent reasoning large language model (LLM) framework designed to integrate and analyze multimodal data, including microbiome profiles, clinical datasets, and external knowledge bases, to…

Artificial Intelligence · Computer Science 2025-08-22 Ziyuan Huang , Vishaldeep Kaur Sekhon , Roozbeh Sadeghian , Maria L. Vaida , Cynthia Jo , Doyle Ward , Vanni Bucci , John P. Haran

Traditional malware detection methods exhibit computational inefficiency due to exhaustive feature extraction requirements, creating accuracy-efficiency trade-offs that limit real-time deployment. We formulate malware classification as a…

Machine Learning · Computer Science 2025-07-08 Naseem Khan , Aref Y. Al-Tamimi , Amine Bermak , Issa M. Khalil

The efficacy of availability poisoning, a method of poisoning data by injecting imperceptible perturbations to prevent its use in model training, has been a hot subject of investigation. Previous research suggested that it was difficult to…

Computer Vision and Pattern Recognition · Computer Science 2023-08-08 Tianrui Qin , Xitong Gao , Juanjuan Zhao , Kejiang Ye , Cheng-Zhong Xu

Whole genome sequencing (WGS) is quickly becoming the customary means for identification of antimicrobial resistance (AMR) due to its ability to obtain high resolution information about the genes and mechanisms that are causing resistance…

Genomics · Quantitative Biology 2021-07-27 Mattia Prosperi , Simone Marini , Christina Boucher , Jiang Bian

Lung adenocarcinoma (LUAD) grading depends on accurately identifying growth patterns, which are indicators of prognosis and can influence treatment decisions. Common deep learning approaches to determine the predominant pattern rely on…

Computer Vision and Pattern Recognition · Computer Science 2026-04-24 Laura Valeria Perez-Herrera , M. J. Garcia-Gonzalez , Karen Lopez-Linares

Accurate prediction of drug-target binding affinity can accelerate drug discovery by prioritizing promising compounds before costly wet-lab screening. While deep learning has advanced this task, most models fuse ligand and protein…

Machine Learning · Computer Science 2025-09-26 Mohammadsaleh Refahi , Bahrad A. Sokhansanj , James R. Brown , Gail Rosen

Rubric-based reward shaping provides interpretable and editable reward signals for fine-tuning LLMs via reinforcement learning (RL), but existing adaptive rubric methods typically update criteria from local evidence such as the current…

Machine Learning · Computer Science 2026-05-27 Peilin Wu , Xinlu Zhang , Kun Wan , Wentian Zhao , Gang Wu , Xinya Du , Zhiyu Chen

Traditional AI methods often rely on task-specific model designs and training, which constrain both the scalability of model size and generalization across different tasks. Here, we introduce ChemFM, a large foundation model specifically…

Computational Engineering, Finance, and Science · Computer Science 2025-11-06 Feiyang Cai , Katelin Zacour , Tianyu Zhu , Tzuen-Rong Tzeng , Yongping Duan , Ling Liu , Srikanth Pilla , Gang Li , Feng Luo

We propose a novel model-based offline Reinforcement Learning (RL) framework, called Adversarial Model for Offline Reinforcement Learning (ARMOR), which can robustly learn policies to improve upon an arbitrary reference policy regardless of…

Machine Learning · Computer Science 2023-12-29 Mohak Bhardwaj , Tengyang Xie , Byron Boots , Nan Jiang , Ching-An Cheng

New combinations of existing antibiotics are being investigated to combat bacterial resilience. This requires detection technologies with reasonable cost, accuracy, resolution, and throughput. Here, we present a multi -drug screening…

Signal Processing · Electrical Eng. & Systems 2022-05-25 Taejoon Kong , Nicholas Backes , Gregory Phillips , Santosh Pandey

Machine learning-based malware detection is known to be vulnerable to adversarial evasion attacks. The state-of-the-art is that there are no effective defenses against these attacks. As a response to the adversarial malware classification…

Cryptography and Security · Computer Science 2021-01-18 Deqiang Li , Qianmu Li , Yanfang Ye , Shouhuai Xu

Biopharmaceutical manufacturing faces critical challenges, including complexity, high variability, lengthy lead time, and limited historical data and knowledge of the underlying system stochastic process. To address these challenges, we…

Machine Learning · Computer Science 2020-06-18 Hua Zheng , Wei Xie , Mingbin Ben Feng

Tuberculosis (TB) is the world's deadliest infectious disease, with over 1.5 million deaths annually and 10 million new cases reported each year. The causative organism, Mycobacterium tuberculosis (Mtb) can take nearly 40 days to culture, a…

We propose a reinforcement learning-based search strategy to explore new physics beyond the Standard Model. The reinforcement learning, which is one of machine learning methods, is a powerful approach to find model parameters with…

High Energy Physics - Phenomenology · Physics 2025-10-14 Satsuki Nishimura , Coh Miyao , Hajime Otsuka

Protein-ligand binding affinity prediction is essential for drug discovery and toxicity assessment. While machine learning (ML) promises fast and accurate predictions, its progress is constrained by the availability of reliable data. In…

The inapplicability of amino acid covariation methods to small protein families has limited their use for structural annotation of whole genomes. Recently, deep learning has shown promise in allowing accurate residue-residue contact…

Biomolecules · Quantitative Biology 2019-09-10 Joe G Greener , Shaun M Kandathil , David T Jones

Deep learning-based adversarial malware detectors have yielded promising results in detecting never-before-seen malware executables without relying on expensive dynamic behavior analysis and sandbox. Despite their abilities, these detectors…

Cryptography and Security · Computer Science 2022-10-28 James Lee Hu , Mohammadreza Ebrahimi , Weifeng Li , Xin Li , Hsinchun Chen

Epidemics of infectious diseases are an important threat to public health and global economies. Yet, the development of prevention strategies remains a challenging process, as epidemics are non-linear and complex processes. For this reason,…

Machine Learning · Computer Science 2020-03-31 Pieter Libin , Arno Moonens , Timothy Verstraeten , Fabian Perez-Sanjines , Niel Hens , Philippe Lemey , Ann Nowé
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