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The evolution of drug-resistant microbial species is one of the major challenges to global health. The development of new antimicrobial treatments such as antimicrobial peptides needs to be accelerated to combat this threat. However, the…

Biomolecules · Quantitative Biology 2019-11-15 Sadaf Gull , Fayyaz Minhas

With the growing needs of online A/B testing to support the innovation in industry, the opportunity cost of running an experiment becomes non-negligible. Therefore, there is an increasing demand for an efficient continuous monitoring…

Machine Learning · Computer Science 2023-04-04 Runzhe Wan , Yu Liu , James McQueen , Doug Hains , Rui Song

Skin and soft tissue infections (SSTIs) are among the most frequently observed diseases in ambulatory and hospital settings. Resistance of diverse bacterial pathogens to antibiotics is a significant cause of severe SSTIs, and treatment…

Machine Learning · Computer Science 2022-03-01 Farnaz H. Foomani , Shahzad Mirza , Sahjid Mukhida , Kannuri Sriram , Zeyun Yu , Aayush Gupta , Sandeep Gopalakrishnan

Antimicrobial resistance is an emerging global health crisis that is undermining advances in modern medicine and, if unmitigated, threatens to kill 10 million people per year worldwide by 2050. Research over the last decade has demonstrated…

Quantitative Methods · Quantitative Biology 2020-09-24 K. Farquhar , H. Flohr , D. A. Charlebois

Antimicrobial resistance (AMR) poses a significant threat to public health by increasing mortality, extending hospital stays, and increasing healthcare costs. It affects people of all ages and affects health services, veterinary medicine,…

Dynamical Systems · Mathematics 2023-06-12 Alissen Peterson , Jhoana P. Romero-Leiton , Pablo Aguirre , Kamal R. Acharya , Bouchra Nasri

Bacterial infections are responsible for high mortality worldwide. Antimicrobial resistance underlying the infection, and multifaceted patient's clinical status can hamper the correct choice of antibiotic treatment. Randomized clinical…

Machine Learning · Statistics 2022-07-18 Inyoung Jun , Simone Marini , Christina A. Boucher , J. Glenn Morris , Jiang Bian , Mattia Prosperi

Medication recommendation is a crucial task in healthcare, especially for patients with complex medical conditions. However, existing methods often struggle to effectively balance the reuse of historical medications with the introduction of…

Artificial Intelligence · Computer Science 2025-07-08 Feiyue Wu , Tianxing Wu , Shenqi Jing

Modern therapeutic antibody design often involves composing multi-part assemblages of individual functional domains, each of which may be derived from a different source or engineered independently. While these complex formats can expand…

Machine Learning · Computer Science 2025-09-25 Jiayi Xin , Aniruddh Raghu , Nick Bhattacharya , Adam Carr , Melanie Montgomery , Hunter Elliott

To overcome the high attrition rate and limited clinical translatability in drug discovery, we introduce the concept of Maximum Drug-Likeness (MDL) and develop an applicable Fivefold MDL strategy (5F-MDL) to reshape the screening paradigm.…

Quantitative Methods · Quantitative Biology 2025-12-29 Hao-Yu Zhu , Shi-Jie Du , Lu Xu , Wei Shi

Adversarial Malware Generation (AMG), the generation of adversarial malware variants to strengthen Deep Learning (DL)-based malware detectors has emerged as a crucial tool in the development of proactive cyberdefense. However, the majority…

Cryptography and Security · Computer Science 2024-02-06 Brian Etter , James Lee Hu , Mohammedreza Ebrahimi , Weifeng Li , Xin Li , Hsinchun Chen

Adversarial data can lead to malfunction of deep learning applications. It is essential to develop deep learning models that are robust to adversarial data while accurate on standard, clean data. In this study, we proposed a novel…

Image and Video Processing · Electrical Eng. & Systems 2024-02-15 Degan Hao , Dooman Arefan , Margarita Zuley , Wendie Berg , Shandong Wu

Antimicrobial resistance (AMR) threatens global health. A promising and underexplored strategy to tackle this problem is sequential therapies exploiting collateral sensitivity (CS), whereby resistance to one drug increases sensitivity to…

Populations and Evolution · Quantitative Biology 2026-05-11 Javier Molina-Hernández , José A. Cuesta , Beatriz Pascual-Escudero , Saúl Ares , Pablo Catalán

Gram-negative bacteria are a serious health concern due to the strong multidrug resistance that they display, partly due to the presence of a permeability barrier comprising two membranes with active efflux. New approaches are urgently…

Objective: Sepsis is a life-threatening condition caused by severe infection leading to acute organ dysfunction. This study proposes a data-driven metric and a continuous reward function to optimize personalized heparin therapy in surgical…

Machine Learning · Computer Science 2025-12-15 Jiang Liu , Yujie Li , Chan Zhou , Yihao Xie , Qilong Sun , Xin Shu , Peiwei Li , Chunyong Yang , Yiziting Zhu , Jiaqi Zhu , Yuwen Chen , Bo An , Hao Wu , Bin Yi

Deep learning has shown impressive performance on challenging perceptual tasks and has been widely used in software to provide intelligent services. However, researchers found deep neural networks vulnerable to adversarial examples. Since…

Computer Vision and Pattern Recognition · Computer Science 2021-03-18 Haowen Liu , Ping Yi , Hsiao-Ying Lin , Jie Shi , Weidong Qiu

One of the key requirements for incorporating machine learning into the drug discovery process is complete reproducibility and traceability of the model building and evaluation process. With this in mind, we have developed an end-to-end…

DL-based automatic modulation classification (AMC) models are highly susceptible to adversarial attacks, where even minimal input perturbations can cause severe misclassifications. While adversarially training an AMC model based on an…

Machine Learning · Computer Science 2025-01-06 Amirmohammad Bamdad , Ali Owfi , Fatemeh Afghah

Human decision-making differs due to variation in both incentives and available information. This constitutes a substantial challenge for the evaluation of whether and how machine learning predictions can improve decision outcomes. We…

General Economics · Economics 2020-11-24 Michael Allan Ribers , Hannes Ullrich

Diseases caused by bacteria have been a threat to human civilisation for centuries. Despite the availability of numerous antibacterial drugs today, bacterial diseases continue to pose life-threatening challenges. The credit for this goes to…

Computational Physics · Physics 2026-05-13 Pritish Joshi , Abhishek Bera , Niladri Patra

Properties of molecules are indicative of their functions and thus are useful in many applications. With the advances of deep learning methods, computational approaches for predicting molecular properties are gaining increasing momentum.…

Quantitative Methods · Quantitative Biology 2021-07-07 Zhengyang Wang , Meng Liu , Youzhi Luo , Zhao Xu , Yaochen Xie , Limei Wang , Lei Cai , Qi Qi , Zhuoning Yuan , Tianbao Yang , Shuiwang Ji