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We consider an incremental variant of the rooted prize-collecting Steiner-tree problem with a growing budget constraint. While no incremental solution exists that simultaneously approximates the optimum for all budgets, we show that a…

Data Structures and Algorithms · Computer Science 2024-07-08 Yann Disser , Svenja M. Griesbach , Max Klimm , Annette Lutz

Computing the similarity between two protein structures is a crucial task in molecular biology, and has been extensively investigated. Many protein structure comparison methods can be modeled as maximum clique problems in specific k-partite…

Biomolecules · Quantitative Biology 2009-10-07 Noël Malod-Dognin , Rumen Andonov , Nicola Yanev

The wreath product of graphs is a graph composition inspired by the notion of wreath product of groups, with interesting connections with Geometric Group Theory and Probability. This paper is devoted to the description of some degree and…

Combinatorics · Mathematics 2020-03-20 Matteo Cavaleri , Alfredo Donno

In this paper, we present a polynomial-time algorithm for the maximum clique problem, which implies P = NP. Our algorithm is based on a continuous game-theoretic representation of this problem and at its heart lies a discrete-time dynamical…

Computer Science and Game Theory · Computer Science 2021-11-05 Ioannis Avramopoulos

A simple connected graph G is called a p-quasi k-cyclic graph, if there exists a subset S of vertices such that |S|=p, G-S is k-cyclic and there is no a subset S` of V(G) such that |S`|<|S| and G-S` is k-cyclic. The aim of this paper is to…

Combinatorics · Mathematics 2019-10-08 A Ghalavand , A R Ashrafi

The max-cut problem is a classical graph theory problem which is NP-complete. The best polynomial time approximation scheme relies on \emph{semidefinite programming} (SDP). We study the conditions under which graphs of certain classes have…

Optimization and Control · Mathematics 2021-09-07 Daniel Hong , Hyunwoo Lee , Alex Wei

We present a combinatorial algorithm for computing exact maximum flows in directed graphs with $n$ vertices and edge capacities from $\{1,\dots,U\}$ in $n^{2+o(1)}\log U$ time, which is almost optimal in dense graphs. Our algorithm is a…

Data Structures and Algorithms · Computer Science 2025-09-30 Aaron Bernstein , Joakim Blikstad , Thatchaphol Saranurak , Ta-Wei Tu

In a graph G, a dissociation set is a subset of vertices which induces a subgraph with vertex degree at most 1. Finding a dissociation set of maximum cardinality in a graph is NP-hard even for bipartite graphs and is called the maximum…

Combinatorics · Mathematics 2021-08-02 Jianhua Tu , Lei Zhang , Junfeng Du , Rongling Lang

Szeged, PI and Mostar indices are some of the most investigated distance-based molecular descriptors. Recently, many different variations of these topological indices appeared in the literature and sometimes they are all together called…

Combinatorics · Mathematics 2021-02-15 Simon Brezovnik , Niko Tratnik

A maximal independent set (MIS) can be maintained in an evolving $m$-edge graph by simply recomputing it from scratch in $O(m)$ time after each update. But can it be maintained in time sublinear in $m$ in fully dynamic graphs? We answer…

Data Structures and Algorithms · Computer Science 2018-02-28 Sepehr Assadi , Krzysztof Onak , Baruch Schieber , Shay Solomon

In social networks the {\sc Strong Triadic Closure} is an assignment of the edges with strong or weak labels such that any two vertices that have a common neighbor with a strong edge are adjacent. The problem of maximizing the number of…

Data Structures and Algorithms · Computer Science 2016-10-10 Athanasios Konstantinidis , Charis Papadopoulos

\emph{Maximal ancestral graph} (MAGs) is a class of graphical model that extend the famous \emph{directed acyclic graph} in the presence of latent confounders. Most score-based approaches to learn the unknown MAG from empirical data rely on…

Machine Learning · Statistics 2024-02-08 Zhongyi Hu , Robin Evans

We give an $O^*(1.0821^n)$-time, polynomial space algorithm for computing Maximum Independent Set in graphs with bounded degree 3. This improves all the previous running time bounds known for the problem.

Data Structures and Algorithms · Computer Science 2022-06-20 Davis Issac , Ragesh Jaiswal

The M-polynomial, introduced by Deutsch and Klav\v{z}ar in 2015, provides a unifying algebraic framework for the computation of numerous degree-based topological indices such as the Zagreb, Randic, harmonic, and forgotten indices. Despite…

Combinatorics · Mathematics 2026-03-31 El-Mehdi Mehiri

This paper deals with the problem of finding, for a given graph and a given natural number k, a subgraph of k nodes with a maximum number of edges. This problem is known as the k-cluster problem and it is NP-hard on general graphs as well…

Data Structures and Algorithms · Computer Science 2011-11-09 George B. Mertzios

We study Markov chains for randomly sampling $k$-colorings of a graph with maximum degree $\Delta$. Our main result is a polynomial upper bound on the mixing time of the single-site update chain known as the Glauber dynamics for planar…

Probability · Mathematics 2011-09-01 Thomas P. Hayes , Juan C. Vera , Eric Vigoda

Graph alignment aims at finding the vertex correspondence between two correlated graphs, a task that frequently occurs in graph mining applications such as social network analysis. Attributed graph alignment is a variant of graph alignment,…

Data Structures and Algorithms · Computer Science 2024-03-13 Ziao Wang , Ning Zhang , Weina Wang , Lele Wang

In the classic Maximum Weight Independent Set problem we are given a graph $G$ with a nonnegative weight function on vertices, and the goal is to find an independent set in $G$ of maximum possible weight. While the problem is NP-hard in…

Data Structures and Algorithms · Computer Science 2020-03-24 Andrzej Grzesik , Tereza Klimošová , Marcin Pilipczuk , Michał Pilipczuk

Extremal graph theory studies the maximum or minimum number of subgraphs isomorphic to a prescribed graph under given constraints. \textit{Localization} has recently emerged as a framework that refines such problems by assigning extremal…

Combinatorics · Mathematics 2026-03-10 Rajat Adak , L. Sunil Chandran

Let M be a module over a commutative ring and let Spec(M) (resp. Max(M)) be the collection of all prime (resp. maximal) submodules of M. We topologize Spec(M) with Zariski topology, which is analogous to that for Spec(R), and consider…

Commutative Algebra · Mathematics 2015-09-29 Habibollah Ansari-Toroghy , Shokoufeh Habibi