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This paper leverages the framework of algorithms-with-predictions to design data structures for two fundamental dynamic graph problems: incremental topological ordering and cycle detection. In these problems, the input is a directed graph…

Data Structures and Algorithms · Computer Science 2024-02-20 Samuel McCauley , Benjamin Moseley , Aidin Niaparast , Shikha Singh

Community detection has arisen as one of the most relevant topics in the field of graph data mining due to its importance in many fields such as biology, social networks or network traffic analysis. The metrics proposed to shape communities…

Social and Information Networks · Computer Science 2012-07-27 Arnau Prat-Pérez , David Dominguez-Sal , Josep M. Brunat , Josep-Lluis Larriba-Pey

Geometric graphs form an important family of hidden structures behind data. In this paper, we develop an efficient and robust algorithm to infer a graph skeleton of a high-dimensional point cloud dataset (PCD). Previously, there has been…

Computational Geometry · Computer Science 2022-10-17 Lucas Magee , Yusu Wang

We propose a complexity measure which addresses the functional flexibility of networks. It is conjectured that the functional flexibility is reflected in the topological diversity of the assigned graphs, resulting from a resolution of their…

Condensed Matter · Physics 2009-11-10 Hildegard Meyer-Ortmanns

Persistent homology has been studied to better understand the structural properties and topology features of weighted networks. It can reveal hidden layers of information about the higher-order structures formed by non-pairwise interactions…

Combinatorics · Mathematics 2025-06-25 Udit Raj , Slobodan Maletić , Sudeepto Bhattacharya

Many data-rich industries are interested in the efficient discovery and modelling of structures underlying large data sets, as it allows for the fast triage and dimension reduction of large volumes of data embedded in high dimensional…

Algebraic Topology · Mathematics 2019-09-30 Yossi Bokor , Daniel Grixti-Cheng , Markus Hegland , Stephen Roberts , Katharine Turner

This work describes how the formalization of complex network concepts in terms of discrete mathematics, especially mathematical morphology, allows a series of generalizations and important results ranging from new measurements of the…

Statistical Mechanics · Physics 2007-09-19 Luciano da Fontoura Costa , Luis Enrique C. da Rocha

The study of complex networks is a significant development in modern science, and has enriched the social sciences, biology, physics, and computer science. Models and algorithms for such networks are pervasive in our society, and impact…

Machine Learning · Computer Science 2022-06-08 C. Seshadhri , Aneesh Sharma , Andrew Stolman , Ashish Goel

While many approaches to make neural networks more fathomable have been proposed, they are restricted to interrogating the network with input data. Measures for characterizing and monitoring structural properties, however, have not been…

Machine Learning · Computer Science 2019-09-30 Bastian Rieck , Matteo Togninalli , Christian Bock , Michael Moor , Max Horn , Thomas Gumbsch , Karsten Borgwardt

Combinatorial and topological structures, such as graphs, simplicial complexes, and cell complexes, form the foundation of geometric and topological deep learning (GDL and TDL) architectures. These models aggregate signals over such…

Machine Learning · Computer Science 2026-05-28 Chuan-Shen Hu

We show that the community structure of a network can be used as a coarse version of its embedding in a hidden space with hyperbolic geometry. The finding emerges from a systematic analysis of several real-world and synthetic networks. We…

Physics and Society · Physics 2018-08-30 Ali Faqeeh , Saeed Osat , Filippo Radicchi

Inferring topological characteristics of complex networks from observed data is critical to understand the dynamical behavior of networked systems, ranging from the Internet and the World Wide Web to biological networks and social networks.…

Multiagent Systems · Computer Science 2020-05-13 Chunheng Jiang , Jianxi Gao , Malik Magdon-Ismail

Real bipartite networks combine degree-constrained random mixing with structured, locality-like rules. We introduce a statistical filter that benchmarks node-level bipartite clustering against degree-preserving randomizations to classify…

Physics and Society · Physics 2025-09-27 Lucía S. Ramírez , Roya Aliakbarisani , M. Ángeles Serrano , Marián Boguñá

Networks are widely used in the biological, physical, and social sciences as a concise mathematical representation of the topology of systems of interacting components. Understanding the structure of these networks is one of the outstanding…

Data Analysis, Statistics and Probability · Physics 2007-06-21 M. E. J. Newman , E. A. Leicht

In complex, high dimensional and unstructured data it is often difficult to extract meaningful patterns. This is especially the case when dealing with textual data. Recent studies in machine learning, information theory and network science…

Computation and Language · Computer Science 2017-08-01 Stefano Gurciullo , Slava Mikhaylov

For decades, complex networks, such as social networks, biological networks, chemical networks, technological networks, have been used to study the evolution and dynamics of different kinds of complex systems. These complex systems can be…

Social and Information Networks · Computer Science 2020-12-16 Akrati Saxena

Topological data analysis (TDA) detects geometric structure in biological data. However, many TDA algorithms are memory intensive and impractical for massive datasets. Here, we introduce a statistical protocol that reduces TDA's memory…

Quantitative Methods · Quantitative Biology 2025-09-05 Andrew J. Stier , Naichen Shi , Raed Al Kontar , Chad Giusti , Marc G. Berman

Networks are ubiquitous structure that describes complex relationships between different entities in the real world. As a critical component of prediction task over nodes in networks, learning the feature representation of nodes has become…

Machine Learning · Computer Science 2018-09-10 Hansheng Xue , Jiajie Peng , Xuequn Shang

Low-dimensional embeddings are a cornerstone in the modelling and analysis of complex networks. However, most existing approaches for mining network embedding spaces rely on computationally intensive machine learning systems to facilitate…

Social and Information Networks · Computer Science 2024-10-04 Alexandros Xenos , Noel-Malod Dognin , Natasa Przulj

Pattern counting in graphs is a fundamental primitive for many network analysis tasks, and a number of methods have been developed for scaling subgraph counting to large graphs. Many real-world networks carry a natural notion of strength of…

Social and Information Networks · Computer Science 2019-10-03 Raunak Kumar , Paul Liu , Moses Charikar , Austin R. Benson