Related papers: Phyllotaxis in a Keller-Segel model
Chemical gardens are mineral aggregates that grow in three dimensions with plant-like forms and share properties with self-assembled structures like nano-scale tubes, brinicles or chimneys at hydrothermal vents. The analysis of their shapes…
Many cellular processes require a polarization axis which generally initially emerges as an inhomogeneous distribution of molecular markers in the cell. We present a simple analytical model of a general mechanism of cell polarization taking…
Myxobacteria aggregate and generate fruiting bodies in the soil to survive under starvation conditions. Considering soil as a porous medium, the biological mechanism and dynamic behavior of myxobacteria and slime (chemoattractants) affected…
The Keller-Segel model is a well-known system representing chemotaxis in living organisms. We study the convergence of a generalized nonlinear variant of the Keller-Segel to the degenerate Cahn-Hilliard system. This analysis is made…
Cells exhibit qualitatively different behaviors on substrates with different rigidities. The fact that cells are more polarized on the stiffer substrate motivates us to construct a two-dimensional cell with the distribution of focal…
We consider the parabolic-elliptic Keller-Segel system in dimensions $d \geq 3$, which is the mass supercritical case. This system is known to exhibit rich dynamical behavior including singularity formation via self-similar solutions. An…
We consider a two-dimensional, tangentially active, semi-flexible, self-avoiding polymer to find a dynamical re-entrant transition between motile open chains and spinning achiral spirals with increasing activity. Utilizing probability…
We show that the spontaneous scalarization scenario in scalar-tensor theories is a specific case of a more general phenomenon. The key fact is that the instability causing the spontaneous growth in scalars is due to the nonminimal coupling…
The central task in the study of self-organization is to explore the general mechanism of emergences. However, this is inhibited by the missing of a full knowledge of the microscopic dynamics of emergence. Here, in this study, the…
Many active fluid systems encountered in biology are set in total geometric confinement. Cytoplasmic streaming in plant cells is a prominent and ubiquitous example, in which cargo-carrying molecular motors move along polymer filaments and…
We study a heretofore ignored class of spiral patterns for oscillatory media as characterized by the complex Landau-Ginzburg model. These spirals emerge from modulating the growth rate as a function of $r$, thereby turning off the…
Inspired by the Turing mechanism for pattern formation, we propose a simple self-propelled particle model with short-ranged alignment and anti-alignment at larger distances. It is able to produce orientationally ordered states, periodic…
Many developmental processes in biology utilize Notch-Delta signaling to construct an ordered pattern of cellular differentiation. This signaling modality is based on nearest-neighbor contact, as opposed to the more familiar mechanism…
In this paper, we present high-level overviews of tile-based self-assembling systems capable of producing complex, infinite, aperiodic structures known as discrete self-similar fractals. Fractals have a variety of interesting mathematical…
We rigorously derive a two-dimensional Keller-Segel type system with signal-dependent sensitivity from a stochastic interacting particle model. By employing suitably defined stopping times, we prove that the convergence of the interacting…
This paper demonstrates that the pattern of lipid spiculesthat emerge on the surface of red blood cells in the classic 'Discocyte to Echinocyte' shape change is a generative spiral, and presents a qualitative, fluid- driven mechanism for…
The reproduction of a living cell requires a repeatable set of chemical events to be properly coordinated. Such events define a replication cycle, coupling the growth and shape change of the cell membrane with internal metabolic reactions.…
Motivated by recent experimental findings in chemical synthesis of colloidal particles, we draw an analogy between self-assembly processes occurring in biological systems (e.g. protein folding) and a new exciting possibility in the field of…
In this paper we study the controllability of the Keller-Segel system approximating its parabolic-elliptic version. We show that this parabolic system is locally uniform controllable around a constant solution of the parabolic-elliptic…
We rigorously prove a form of disorder-resistance for a class of one-dimensional cellular automaton rules, including some that arise as boundary dynamics of two-dimensional solidification rules. Specifically, when started from a random…