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This paper proposes a deep learning-based method to identify the segments of a clinical note corresponding to ICD-9 broad categories which are further color-coded with respect to 17 ICD-9 categories. The proposed Medical Segment Colorer…

Computation and Language · Computer Science 2021-01-28 Maha Alkhairy

Recent large language models (LLMs) have demonstrated strong capabilities in understanding and generating code, from competitive programming to repository-level software engineering. In emerging agentic systems, code is no longer only a…

Open-source Large Language Models (LLMs) and their specialized variants, particularly Code LLMs, have recently delivered impressive performance. However, previous Code LLMs are typically fine-tuned on single-source data with limited quality…

Computation and Language · Computer Science 2025-02-04 Zifan Song , Yudong Wang , Wenwei Zhang , Kuikun Liu , Chengqi Lyu , Demin Song , Qipeng Guo , Hang Yan , Dahua Lin , Kai Chen , Cairong Zhao

Recent advances in large language models (LLMs) show potential for clinical applications, such as clinical decision support and trial recommendations. However, the GPT-4 LLM predicts an excessive number of ICD codes for medical coding…

Computation and Language · Computer Science 2023-11-27 Zhichao Yang , Sanjit Singh Batra , Joel Stremmel , Eran Halperin

Clinical document classification is essential for converting unstructured medical texts into standardised ICD-10 diagnoses, yet it faces challenges due to complex medical language, privacy constraints, and limited annotated datasets. Large…

Computation and Language · Computer Science 2026-02-03 Akram Mustafa , Usman Naseem , Mostafa Rahimi Azghadi

Modern clinical practice relies on evidence-based guidelines implemented as compact scoring systems composed of a small number of interpretable decision rules. While machine-learning models achieve strong performance, many fail to translate…

Machine Learning · Computer Science 2026-05-25 Silas Ruhrberg Estévez , Christopher Chiu , Mihaela van der Schaar

We are entering a hybrid era in which human developers and AI coding agents work in the same codebases. While industry practice has long optimized code for human comprehension, it is increasingly important to ensure that LLMs with different…

Software Engineering · Computer Science 2026-01-06 Markus Borg , Nadim Hagatulah , Adam Tornhill , Emma Söderberg

Fine-tuning large language models for code editing has typically relied on mining commits and pull requests. The working hypothesis has been that commit messages describe human intent in natural language, and patches to code describe the…

Software Engineering · Computer Science 2026-03-30 Yangtian Zi , Zixuan Wu , Aleksander Boruch-Gruszecki , Jonathan Bell , Arjun Guha

Clinical Text Notes (CTNs) contain physicians' reasoning process, written in an unstructured free text format, as they examine and interview patients. In recent years, several studies have been published that provide evidence for the…

Computation and Language · Computer Science 2022-08-19 Hlynur D. Hlynsson , Steindór Ellertsson , Jón F. Daðason , Emil L. Sigurdsson , Hrafn Loftsson

This paper introduces Agentic-AI Healthcare, a privacy-aware, multilingual, and explainable research prototype developed as a single-investigator project. The system leverages the emerging Model Context Protocol (MCP) to orchestrate…

Cryptography and Security · Computer Science 2025-10-06 Mohammed A. Shehab

Large language models (LLMs) have enhanced our ability to rapidly analyze and classify unstructured natural language data. However, concerns regarding cost, network limitations, and security constraints have posed challenges for their…

Machine Learning · Computer Science 2024-11-05 David Farr , Nico Manzonelli , Iain Cruickshank , Jevin West

This paper introduces SignAgent, a novel agentic framework that utilises Large Language Models (LLMs) for scalable, linguistically-grounded Sign Language (SL) annotation and dataset curation. Traditional computational methods for SLs often…

Computer Vision and Pattern Recognition · Computer Science 2026-03-20 Oliver Cory , Ozge Mercanoglu Sincan , Richard Bowden

LLM-based agents have demonstrated strong potential for autonomous machine learning, yet their applicability to health data remains limited. Existing systems often struggle to generalize across heterogeneous health data modalities, rely…

Artificial Intelligence · Computer Science 2026-02-03 Tong Xia , Weibin Li , Gang Liu , Yong Li

In the context of the Electronic Health Record, automated diagnosis coding of patient notes is a useful task, but a challenging one due to the large number of codes and the length of patient notes. We investigate four models for assigning…

Computation and Language · Computer Science 2017-11-22 Tal Baumel , Jumana Nassour-Kassis , Raphael Cohen , Michael Elhadad , No`emie Elhadad

Language models (LMs) have achieved impressive accuracy across a variety of tasks but remain vulnerable to high-confidence misclassifications, also referred to as unknown unknowns (UUs). These UUs cluster into blind spots in the feature…

Computation and Language · Computer Science 2024-11-05 Philip Lippmann , Matthijs T. J. Spaan , Jie Yang

The advancement of large language models (LLMs) has catalyzed a paradigm shift from code generation assistance to autonomous coding agents, enabling a novel development methodology termed "Vibe Coding" where developers validate AI-generated…

Large language models (LLMs) have advanced code generation from single-function tasks to competitive-programming problems, but existing multi-agent solutions either rely on costly large-scale (>30B) models or collapse when downsized to…

Computation and Language · Computer Science 2026-02-05 Woongkyu Lee , Junhee Cho , Jungwook Choi

Cell imaging and analysis are fundamental to biomedical research because cells are the basic functional units of life. Among different cell-related analysis, cell counting and detection are widely used. In this paper, we focus on one common…

Computer Vision and Pattern Recognition · Computer Science 2019-04-19 Haoyi Liang , Aijaz Naik , Cedric L. Williams , Jaideep Kapur , Daniel S. Weller

This study presents a novel two-stage Retrieve-Rank system for automated ICD-10-CM medical coding, comparing its performance against a Vanilla Large Language Model (LLM) approach. Evaluating both systems on a dataset of 100 single-term…

Information Retrieval · Computer Science 2024-07-19 Keith Kwan

Objective: Electronic health records (EHR) data are prone to missingness and errors. Previously, we devised an "enriched" chart review protocol where a "roadmap" of auxiliary diagnoses (anchors) was used to recover missing values in EHR…

Machine Learning · Computer Science 2025-10-07 Sarah C. Lotspeich , Abbey Collins , Brian J. Wells , Ashish K. Khanna , Joseph Rigdon , Lucy D'Agostino McGowan