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We propose a general parametrizable model to capture the dynamic interaction among bacteria in the formation of micro-colonies. micro-colonies represent the first social step towards the formation of structured multicellular communities…

Populations and Evolution · Quantitative Biology 2014-10-30 Luca Canzian , Kun Zhao , Gerard C. L. Wong , Mihaela van der Schaar

Breakability rate of fragile item depends on the accumulated stress of heaped stock level. So breakablility rate can be considered as dependent parameter of stock variable. The unit production cost is a function of production rate and also…

Optimization and Control · Mathematics 2020-06-03 J. N. Roul , K. Maity , S. Kar , M. Maiti

This work proposes an automatic control solution for the operation of conventional wastewater treatment plants (WWTPs) as energy-autonomous water resource recovery facilities. We first conceptualize a classification of the quality of…

Systems and Control · Electrical Eng. & Systems 2025-06-13 Otacilio B. L. Neto , Michela Mulas , Iiro Harjunkoski , Francesco Corona

In this paper, we aim to develop the theory of optimal stochastic control for branching diffusion processes where both the movement and the reproduction of the particles depend on the control. More precisely, we study the problem of…

Probability · Mathematics 2016-09-19 Julien Claisse

Co-pyrolysis of biomass feedstocks with polymeric wastes is a promising strategy for improving the quantity and quality parameters of the resulting liquid fuel. Numerous experimental measurements are typically conducted to find the optimal…

Apoptosis is an important area of research because of its role in keeping a mature multicellular organism's number of cells constant hence, ensuring that the organism does not have cell accumulation that may transform into cancer with…

Molecular Networks · Quantitative Biology 2010-10-01 Elife Zerrin Bagci , Sercan Murat Sen , Mehmet Cihan Camurdan

The identification of cellular objectives is one of the central topics in the research of microbial metabolic networks. In particular, the information about a cellular objective is needed in flux balance analysis which is a commonly used…

Molecular Networks · Quantitative Biology 2012-03-22 Tommi Aho , Juha Kesseli , Olli Yli-Harja , Stuart A. Kauffman

Optimizing solution-processed organic solar cells is a complex task due to the vast parameter space in organic photovoltaics (OPV). Classical Edisonian or one-variable-at-a-time (OVAT) optimization approaches are laborious, time-consuming,…

A general framework to describe a vast majority of biology-inspired systems is to model them as stochastic processes in which multiple couplings are in play at the same time. Molecular motors, chemical reaction networks, catalytic enzymes,…

Statistical Mechanics · Physics 2020-11-25 Daniel M. Busiello , Deepak Gupta , Amos Maritan

Biofilms are communities of bacteria that exhibit a multitude of multiscale biomechanical behaviors. Recent experimental advances have lead to characterizations of these behaviors in terms of measurements of the viscoelastic moduli of…

Cell Behavior · Quantitative Biology 2017-07-19 Jay A. Stotsky , Vanja Dukic , David M. Bortz

Video processing for real-time analytics in resource-constrained environments presents a significant challenge in balancing energy consumption and video semantics. This paper addresses the problem of energy-efficient video processing by…

Computer Vision and Pattern Recognition · Computer Science 2025-06-03 Benjamin Civjan , Bo Chen , Ruixiao Zhang , Klara Nahrstedt

In this paper, we analyze the dynamics of a multi-species fisheries system in the presence of harvesting. We solve the problem of finding the optimal harvesting strategy for a mid-term horizon with a fixed final stock of each species, while…

Optimization and Control · Mathematics 2025-01-17 L. Bayon , P. Fortuny Ayuso , P. J. Garcia-Nieto , J. A. Otero , P. M. Suarez , C. Tasis

Metagenomics has revealed hundreds of bacterial species in almost all microbiota. In a few well-studied cases, bacterial communities have been observed to coordinate their metabolic fluxes. In principle, bacteria can divide tasks to reap…

Populations and Evolution · Quantitative Biology 2016-04-12 Thibaud Taillefumier , Anna Posfai , Yigal Meir , Ned S. Wingreen

The problem of designing a profit-maximizing, Bayesian incentive compatible and individually rational mechanism with flexible consumers and costly heterogeneous supply is considered. In our setup, each consumer is associated with a…

Computer Science and Game Theory · Computer Science 2018-02-01 Shiva Navabi , Ashutosh Nayyar

We present a model for unicellular algal growth as motivated by several experiments implicating the importance of calcium ions and ``loosening'' enzymes in morphogenesis. A growing cell at rest in a diffusive calcium solution is viewed as…

patt-sol · Physics 2009-10-30 Royce Kam , Herbert Levine

In this paper we address a general parameter estimation methodology for an extended biokinetic degradation model [1] for poorly degradable micropollutants. In particular we concentrate on parameter estimation of the micropollutant…

Quantitative Methods · Quantitative Biology 2007-09-14 Monika Schoenerklee , Momtchil Peev

This study suggests a novel two-stage Mixed-Integer Nonlinear Programming model considering uncertainty related to implementation of carbon dioxide emission regulatory policies, which are carbon trading and emission taxing and can change…

Optimization and Control · Mathematics 2025-02-03 Handan Akülker , Burak Alakent , Erdal Aydin

In the modern world, technology is at its peak. Different avenues in programming and technology have been explored for data analysis, automation, and robotics. Machine learning is key to optimize data analysis, make accurate predictions,…

Subcellular Processes · Quantitative Biology 2023-10-18 Akshay Bhalla , Suraj Rajendran

Microbial fuel cells (MFCs) perform wastewater treatment and electricity production through the conversion of organic matter using microorganisms. For practical applications, it has been suggested that greater efficiency can be achieved by…

Neural and Evolutionary Computing · Computer Science 2022-12-05 Richard J. Preen , Jiseon You , Larry Bull , Ioannis A. Ieropoulos

Bacterial communities such as biofilms are widely recognised as being important for survival and persistence of bacteria in harsh environments. Mechanistic models of biofilm growth indicate that the way in which the surface is seeded can…

Quantitative Methods · Quantitative Biology 2007-05-23 Leah R. Johnson
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