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Microgels are cross-linked, colloidal polymer networks with great potential for stimuli-response release in drug-delivery applications, as their size in the nanometer range allows them to pass human cell boundaries. For applications with…

Computational Engineering, Finance, and Science · Computer Science 2023-09-01 Luise F. Kaven , Artur M. Schweidtmann , Jan Keil , Jana Israel , Nadja Wolter , Alexander Mitsos

In a standard optimization approach, the underlying process model is first identified at a given set of operating conditions and this updated model is, then, used to calculate the optimal conditions for the process. This two-step procedure…

Optimization and Control · Mathematics 2015-08-27 Jasdeep S. Mandur , Hector M. Budman

Biological molecular machines convert free energy between different forms in cells, often at high efficiency. Optimal control theory provides a framework to elucidate design principles governing energetically efficient driving. Here, we use…

Biological Physics · Physics 2025-06-12 W. Callum Wareham , David A. Sivak

Advances in cellular imaging technologies, especially those based on fluorescence in situ hybridization (FISH) now allow detailed visualization of the spatial organization of human or bacterial cells. Quantifying this spatial organization…

Strong control over experimental conditions in microfluidic channels provides a unique opportunity to study and optimize membraneless microbial fuel cells (MFCs), particularly with respect to the role of flow. However, improved performance…

Development and optimization of biopharmaceutical production processes with cell cultures is cost- and time-consuming and often performed rather empirically. Efficient optimization of multiple-objectives like process time, viable cell…

Machine Learning · Computer Science 2022-05-09 Tanja Hernández Rodríguez , Anton Sekulic , Markus Lange-Hegermann , Björn Frahm

In this paper, we propose a mathematical formulation for the management of an oil production network as a multistage optimization problem. The reservoir is modeled as a controlled dynamical system by using material balance equations. We use…

Dynamic flux balance analysis uses a quasi-steady state assumption to calculate an organism's metabolic activity at each time-step of a dynamic simulation, using the well-known technique of flux balance analysis. For microbial communities,…

Quantitative Methods · Quantitative Biology 2021-01-27 James D. Brunner , Nicholas Chia

Microbes require several complex organic molecules for growth. A species may obtain a required factor by taking up molecules released by other species or by synthesizing the molecule. The patterns of uptake and synthesis set a flow of…

Populations and Evolution · Quantitative Biology 2014-02-27 Steven A. Frank

The transport of bio-particles in viscous flows exhibits a rich variety of dynamical behaviour, such as morphological transitions, complex orientation dynamics or deformations. Characterising such complex behaviour under well controlled…

Microalgae counting is used to measure biomass quantity. Usually, it is performed in a manual way using a Neubauer chamber and expert criterion, with the risk of a high error rate. This paper addresses the methodology for automatic…

We develop an optimal control model for allocating agricultural crop residues between bioenergy production and soil fertility restoration. The system captures a novel circular feedback: a fraction of cumulative energy output is reinvested…

Optimization and Control · Mathematics 2025-11-14 Othman Cherkaoui Dekkaki

This paper establishes and discusses the consistency and the range of applicability of a simple, but general and predictive analytical formula, enabling to easily assess the maximum volumetric biomass growth rates (the productivities) in…

Other Quantitative Biology · Quantitative Biology 2020-11-11 Jean-François Cornet , Claude-Gilles Dussap

The variations in feedstock characteristics such as moisture and particle size distribution lead to an inconsistent flow of feedstock from the biomass pre-processing system to the reactor in-feed system. These inconsistencies result in low…

Optimization and Control · Mathematics 2021-03-10 Fikri Kucuksayacigil , Mohammad Roni , Sandra D. Eksioglu , Qiushi Chen

Ethylene is a crucial chemical in manufacturing numerous consumer products. In recent years, the oxidative dehydrogenation of ethane (ODHE) technique has garnered significant interest as a means for ethylene production due to its high…

Chemical Physics · Physics 2025-07-11 Seyed Reza Nabavi , Zhiyuan Wang , María Laura Rodríguez

Performance and energy are the two most important objectives for optimisation on modern parallel platforms. Latest research demonstrated the importance of workload distribution as a decision variable in the bi-objective optimisation for…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-07-10 Hamidreza Khaleghzadeh , Muhammad Fahad , Arsalan Shahid , Ravi Reddy Manumachu , Alexey Lastovetsky

Mathematical modelling can help to explain the nature and dynamics of infection transmissions, as well as support a policy for implementing those strategies that are most likely to bring public health and economic benefits. The paper…

Optimization and Control · Mathematics 2015-09-01 Roman Denysiuk , Cristiana J. Silva , Delfim F. M. Torres

The present study aims to describe an innovative approach that enables the system to achieve high yielding for biohydrogen (bio-H$_2$) production using xylose as a by-product of lignocellulosic biomass processing. A hybrid optimization…

Quantitative Methods · Quantitative Biology 2022-02-09 Mahmood Mahmoodi-Eshkaftakia , Gustavo Mockaitis

New experimental results on bacterial growth inspire a novel top-down approach to study cell metabolism, combining mass balance and proteomic constraints to extend and complement Flux Balance Analysis. We introduce here Constrained…

Molecular Networks · Quantitative Biology 2016-07-04 Matteo Mori , Terence Hwa , Olivier C. Martin , Andrea De Martino , Enzo Marinari

The optimization of the electrodes manufacturing process constitutes one of the most critical steps to ensure high-quality Lithium-Ion Battery (LIB) cells, in particular for automotive applications. Because LIB electrode manufacturing is a…