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Planning of biorefinery operations is complicated by the stochastic nature of physical and chemical characteristics of biomass feedstock, such as, moisture level and carbohydrate content. Biomass characteristics affect the performance of…

Optimization and Control · Mathematics 2021-05-05 Dahui Liu , Sandra Eksioglu , Mohammad Roni

Constraint-based optimization of microbial strains and model-based bioprocess design have been used extensively to enhance yields in biotechnological processes. However, strain and process optimization are usually carried out in sequential…

Optimization and Control · Mathematics 2024-07-31 Anita L. Ziegler , Ashutosh Manchanda , Marc-Daniel Stumm , Lars M. Blank , Alexander Mitsos

Microalgae have been shown as a potential bioresource for food, biofuel, and pharmaceutical products. During the growth phases with corresponding environmental conditions, microalgae accumulate different amounts of various metabolites. We…

Biological Physics · Physics 2019-11-06 Jiaqi You , Kevin Mallery , Douglas Mashek , Mark Sanders , Jiarong Hong , Miki Hondzo

High-throughput experimental techniques and bioinformatics tools make it possible to obtain reconstructions of the metabolism of microbial species. Combined with mathematical frameworks such as flux balance analysis, which assumes that…

Modelling the evolution process for the growth of microalgae in an artificial pond is a huge challenge, given the complex interaction between hydrodynamics and biological processes occurring across various timescales. In this paper, we…

Numerical Analysis · Mathematics 2025-12-02 Olivier Bernard , Liu-Di Lu , Jacques Sainte-Marie , Julien Salomon

Dynamic flux balance analysis of a bioreactor is based on the coupling between a dynamic problem, which models the evolution of biomass, feeding substrates and metabolites, and a linear program, which encodes the metabolic activity inside…

Optimization and Control · Mathematics 2015-07-07 Roberta Ghezzi , Benedetto Piccoli

The realization of efficient micro-machines built from active matter requires precise thermodynamic control far from equilibrium. Despite theoretical progress, the focus on single-parameter driving, coupled with strict theoretical…

Soft Condensed Matter · Physics 2026-03-18 Luke K. Davis

The goal of this paper is to review and critically assess different methods to monitor key process variables for ethanol production from lignocellulosic biomass. Because cellulose-based biofuels cannot yet compete with non-cellulosic…

Quantitative Methods · Quantitative Biology 2021-02-01 Pau Cabaneros Lopez , Hannah Feldman , Miguel Mauricio-Iglesias , Helena Junicke , Jakob Kjøbsted Huusom , Krist V. Gernaey

This work presents a mathematical model which describes both the genesis and growth of oxygenic photogranules (OPGs) and the related treatment process. The photogranule has been modelled as a free boundary domain with radial symmetry, which…

Populations and Evolution · Quantitative Biology 2021-04-27 A. Tenore , M. R. Mattei , L. Frunzo

In precision aquaculture, the primary goal is to maximize biomass production while minimizing production costs. This objective can be achieved by optimizing factors that have a strong influence on fish growth, such as the feeding rate,…

Systems and Control · Electrical Eng. & Systems 2021-02-02 Abderrazak Chahid , Ibrahima N'Doye , John E. Majoris , Michael L. Berumen , Taous-Meriem Laleg-Kirati

A multiscale mathematical model describing the genesis and ecology of algal-bacterial photogranules and the metals biosorption on their solid matrix within a sequencing batch reactor (SBR) is presented. The granular biofilm is modelled as a…

Cell Behavior · Quantitative Biology 2023-01-31 F. Russo , A. Tenore , M. R. Mattei , L. Frunzo

Food production is a complex process which can benefit from many optimisation approaches. However, there is growing interest in methods that support customisation of food properties to satisfy individual consumer preferences. This paper…

Neural and Evolutionary Computing · Computer Science 2022-04-14 Mohammad Majid al-Rifaie , Marc Cavazza

We present experimental results demonstrating that, relative to continuous illumination, an increase of a factor of 3-10 in the photon efficiency of algal photo-synthesis is attainable via the judicious application of pulsed light for light…

MicroRNAs are small non-coding nucleotide sequences that regulate target protein expression at post-transcriptional levels. Biogenesis of microRNA is a highly regulated multi-step pathway. Regulation of miRNA biogenesis can be caused…

Molecular Networks · Quantitative Biology 2020-02-03 Dimpal A Nyayanit , Chetan J Gadgil

High-precision micromanipulation techniques, including optical tweezers and hydrodynamic trapping, have garnered wide-spread interest. Recent advances in optofluidic multiplexed assembly and microrobotics demonstrate significant progress,…

Fluid Dynamics · Physics 2025-11-03 Elena Erben , Ivan Saraev , Weida Liao , Fan Nan , Eric Lauga , Moritz Kreysing

The flexible operation of electrified chemical processes, powered by renewable electricity, offers economic and ecological incentives, paving the way for a more sustainable chemical industry. However, this requires a departure from the…

Optimization and Control · Mathematics 2023-08-21 Mohammad El Wajeh , Adel Mhamdi , Alexander Mitsos

Variations of physical and chemical characteristics of biomass reduce equipment utilization and increase operational costs of biomass processing. Biomass processing facilities use sensors to monitor the changes in biomass characteristics.…

Optimization and Control · Mathematics 2021-07-20 Berkay Gulcan , Yongjia Song , Sandra D. Eksioglu

The established microalgae growth models are semi-empirical or considerable fitting coefficients exist currently. Therefore, the ability of the model prediction is reduced by the numerous fitting coefficients. Furthermore, the predicted…

Biological Physics · Physics 2022-05-12 C. Y. Ma

Renewable energy policies have driven the wood pellet market over the last decades worldwide. Among other factors, the return from this business depends largely on how well the producers manage the uncertainty associated with biomass yield…

Optimization and Control · Mathematics 2021-04-29 Amin Aghalari , Badr Saleh Aladwan , Bruno Silva , Shaun Tanger , Mohammad Marufuzzaman , Veera Gnaneswar Gude

Optogenetic modulation of adenosine triphosphatase (ATPase) expression represents a novel approach to maximize bioprocess efficiency by leveraging enforced adenosine triphosphate (ATP) turnover. In this study, we experimentally implement a…