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Discovering causal relationships between different variables from time series data has been a long-standing challenge for many domains such as climate science, finance, and healthcare. Given the complexity of real-world relationships and…

Machine Learning · Computer Science 2022-10-27 Wenbo Gong , Joel Jennings , Cheng Zhang , Nick Pawlowski

Tracing a student's knowledge growth given the past exercise answering is a vital objective in automatic tutoring systems to customize the learning experience. Yet, achieving this objective is a non-trivial task as it involves modeling the…

Computers and Society · Computer Science 2024-10-04 Seif Gad , Sherif Abdelfattah , Ghodai Abdelrahman

Animals use past experiences to adapt future behavior. To enable this rapid learning, vertebrates and invertebrates have evolved analogous neural structures like the vertebrate cerebellum or insect mushroom body. A defining feature of these…

Neurons and Cognition · Quantitative Biology 2025-12-24 Lucas Rudelt , Fabian Mikulasch , Viola Priesemann , André Ferreira Castro

Cell crawling is critical to biological development, homeostasis and disease. In many cases, cell trajectories are quasi-random-walk. In vitro assays on flat surfaces often described such quasi-random-walk cell trajectories as…

The formation of groups of interacting individuals improves performance and fitness in many decentralised systems, from micro-organisms to social insects, from robotic swarms to artificial intelligence algorithms. Often, group formation and…

Soft Condensed Matter · Physics 2023-11-14 Cristóvão S. Dias , Manish Trivedi , Giovanni Volpe , Nuno A. M. Araújo , Giorgio Volpe

We investigate the dynamics of information scrambling in bosonic systems undergoing Gaussian unitary evolution associated with quadratic Hamiltonians. For initial Gaussian states, we observe the disappearance of the memory effect in the…

Quantum Physics · Physics 2025-08-05 Ali Mollabashi , Saleh Rahimi-Keshari

The fractional Brownian motion (fBm) is a paradigmatic strongly non-Markovian process with broad applications in various fields. Despite their importance, the properties of the territory covered by a $d$-dimensional fBm have remained…

Statistical Mechanics · Physics 2024-07-17 L. Régnier , M. Dolgushev , O. Bénichou

Movement in biology is often achieved with distributed control of coupled subcomponents, e.g. muscles and limbs. Coupling could range from weak and local, i.e. decentralized, to strong and global, i.e. centralized. We developed a model-free…

Neurons and Cognition · Quantitative Biology 2019-09-11 Izaak D. Neveln , Amoolya Tirumalai , Simon Sponberg

This paper presents Wanderer, a model of how autonomous adaptive systems coordinate internal biological needs with moment-by-moment assessments of the probabilities of events in the external world. The extent to which Wanderer moves about…

Neural and Evolutionary Computing · Computer Science 2019-07-11 Liane Gabora

Populations of neurons in inferotemporal cortex (IT) maintain an explicit code for object identity that also tolerates transformations of object appearance e.g., position, scale, viewing angle [1, 2, 3]. Though the learning rules are not…

Computer Vision and Pattern Recognition · Computer Science 2015-04-27 Qianli Liao , Joel Z. Leibo , Tomaso Poggio

The mitogen-activated protein kinase (MAPK) signaling cascade, an evolutionarily conserved motif present in all eukaryotic cells, is involved in coordinating critical cell-fate decisions, regulating protein synthesis, and mediating learning…

Subcellular Processes · Quantitative Biology 2024-06-11 Tanmay Mitra , Shakti N. Menon , Sitabhra Sinha

Due to the proficiency of self-attention mechanisms (SAMs) in capturing dependencies in sequence modeling, several existing dynamic graph neural networks (DGNNs) utilize Transformer architectures with various encoding designs to capture…

Machine Learning · Computer Science 2025-06-03 Jie Peng , Zhewei Wei , Yuhang Ye

The structure of interconnected systems and its impact on the system dynamics is a much-studied cross-disciplinary topic. Although various critical phenomena have been found in different models, the study on the connections between…

Statistical Mechanics · Physics 2020-08-03 Ming Li , Linyuan Lü , Youjin Deng , Mao-Bin Hu , Hao Wang , Matúš Medo , H. Eugene Stanley

Inference of detailed vehicle trajectories is crucial for applications such as traffic flow modeling, energy consumption estimation, and traffic flow optimization. Static sensors can provide only aggregated information, posing challenges in…

Systems and Control · Electrical Eng. & Systems 2025-01-24 Yifan Zhang , Anastasios Kouvelas , Michail A. Makridis

We consider the diffusion-advection problem in two simple cellular flow models (often invoked as examples for subdiffusive tracer's motion) and concentrate on the intermediate time range, in which the tracer's motion indeed may show…

Fluid Dynamics · Physics 2016-09-28 Patrick Pöschke , Igor M. Sokolov , Alexander A. Nepomnyashchy , Michael A. Zaks

Habituation - a phenomenon in which a dynamical system exhibits a diminishing response to repeated stimulations that eventually recovers when the stimulus is withheld - is universally observed in living systems from animals to unicellular…

Adaptation and Self-Organizing Systems · Physics 2024-07-26 Matthew Smart , Stanislav Y. Shvartsman , Martin Mönnigmann

Motions of visually coupled zebrafish pairs are studied to understand the effects of information exchange on their behavior as a function of their minimal separation ($d$). We find that when $d$ is small, the pair can display a…

Biological Physics · Physics 2025-02-04 C. K. Chan , Hao-Yun Hsu

We consider random walks on dynamical networks where edges appear and disappear during finite time intervals. The process is grounded on three independent stochastic processes determining the walker's waiting-time, the up-time and down-time…

Physics and Society · Physics 2018-11-28 Julien Petit , Martin Gueuning , Timoteo Carletti , Ben Lauwens , Renaud Lambiotte

We explore the connection between migration patterns and emergent behaviors of evolving populations in spatially heterogeneous environments. Despite extensive studies in ecologically and medically important systems, a unifying framework…

Populations and Evolution · Quantitative Biology 2024-01-10 Casey O. Barkan , Shenshen Wang

Most computational accounts of cognitive maps assume that stability is achieved primarily through sensory anchoring, with self-motion contributing to incremental positional updates only. However, biological spatial representations often…

Neurons and Cognition · Quantitative Biology 2025-12-24 Yingchao Yu , Pengfei Sun , Yaochu Jin , Kuangrong Hao , Hao Zhang , Yifeng Zhang , Wenxuan Pan , Wei Chen , Danyal Akarca , Yuchen Xiao