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Biological and living systems process information across spatiotemporal scales, exhibiting the hallmark ability to constantly modulate their behavior to ever-changing and complex environments. In the presence of repeated stimuli, a…

Statistical Mechanics · Physics 2025-02-04 Giorgio Nicoletti , Matteo Bruzzone , Samir Suweis , Marco Dal Maschio , Daniel Maria Busiello

Only very recently, rescaling time has been recognized as a way to achieve adiabatic dynamics in fast processes. The advantage of time-rescaling over other shortcuts to adiabaticity is that it does not depend on the eigenspectrum and…

Quantum Physics · Physics 2021-01-22 Agniva Roychowdhury , Sebastian Deffner

Non-Markovian stochastic processes are ubiquitous in biology. Nevertheless, we lack a general framework for quantifying historical dependencies. In this Letter, we propose an information-theoretic approach to decompose history dependence in…

Statistical Mechanics · Physics 2025-12-23 Matthew P. Leighton , Christopher W. Lynn

Place recognition, the ability to identify previously visited locations, is critical for both biological navigation and autonomous systems. This review synthesizes findings from robotic systems, animal studies, and human research to explore…

Robotics · Computer Science 2025-11-19 Michael Milford , Tobias Fischer

We study memory based random walk models to understand diffusive motion in crowded heterogeneous environment. The models considered are non-Markovian as the current move of the random walk models is determined by randomly selecting a move…

Statistical Mechanics · Physics 2018-08-01 Sabeeha Hasnain , Upendra Harbola , Pradipta Bandyopadhyay

The stochastic trajectories of molecules in living cells, as well as the dynamics in many other complex systems, often exhibit memory in their path over long periods of time. In addition, these systems can show dynamic heterogeneities due…

Statistical Mechanics · Physics 2024-07-10 Michał Balcerek , Agnieszka Wyłomańska , Krzysztof Burnecki , Ralf Metzler , Diego Krapf

We analyse large deviations of time-averaged quantities in stochastic processes with long-range memory, where the dynamics at time t depends itself on the value q_t of the time-averaged quantity. First we consider the elephant random walk…

Statistical Mechanics · Physics 2020-08-05 Robert L. Jack , Rosemary J. Harris

Collective animal movement fascinates children and scientists alike. One of the most commonly given explanations for collective animal movement is improved foraging. Animals are hypothesized to gain from searching for food in groups. Here,…

Multiagent Systems · Computer Science 2019-04-08 Ravid Cohen , Yossi Yovel , Dan Halperin

Dynamic graph representation learning plays a crucial role in understanding evolving behaviors. However, existing methods often struggle with flexibility, adaptability, and the preservation of temporal and structural dynamics. To address…

Machine Learning · Computer Science 2025-01-22 He Yu , Jing Liu

The applicability of computational and dynamical systems models to organisms is scrutinized, using examples from developmental biology and cognition. Developmental morphogenesis is dependent on the inherent material properties of developing…

Neurons and Cognition · Quantitative Biology 2023-10-24 Stuart A. Newman

Humans and animals show remarkable flexibility in adjusting their behaviour when their goals, or rewards in the environment change. While such flexibility is a hallmark of intelligent behaviour, these multi-task scenarios remain an…

Artificial Intelligence · Computer Science 2020-01-13 Tamas J. Madarasz

In the past decade, a small corner of the fly's visual system has become an important testing ground for ideas about coding and computation in the nervous system. A number of results demonstrate that this system operates with a precision…

Biological Physics · Physics 2007-05-23 Rob de Ruyter van Steveninck , Alexander Borst , William Bialek

A large number of studies have shown the existence of metabolic covalent modifications in different molecular structures, able to store biochemical information that is not encoded by the DNA. Some of these covalent mark patterns can be…

Subcellular Processes · Quantitative Biology 2015-01-12 Ildefonso M. De la Fuente

Deep Learning is becoming increasingly relevant in Embedded and Internet-of-things applications. However, deploying models on embedded devices poses a challenge due to their resource limitations. This can impact the model's inference…

Machine Learning · Computer Science 2024-03-14 Max Sponner , Lorenzo Servadei , Bernd Waschneck , Robert Wille , Akash Kumar

One successful model of interacting biological systems is the Boolean network. The dynamics of a Boolean network, controlled with Boolean functions, is usually considered to be a Markovian (memory-less) process. However, both self…

Molecular Networks · Quantitative Biology 2017-08-30 Haleh Ebadi , Meghdad Saeedian , Marcel Ausloos , GholamReza Jafari

We consider a class of discrete-time random walks with directed unit steps on the integer line. The direction of the steps is reversed at the time instants of events in a discrete-time renewal process and is maintained at uneventful time…

Probability · Mathematics 2023-01-04 Thomas M. Michelitsch , Federico Polito , Alejandro P. Riascos

Gait is a popular biometric pattern used for identifying people based on their way of walking. Traditionally, gait recognition approaches based on deep learning are trained using the whole training dataset. In fact, if new data (classes,…

Computer Vision and Pattern Recognition · Computer Science 2020-09-01 Zihao Mu , Francisco M. Castro , Manuel J. Marin-Jimenez , Nicolas Guil , Yan-ran Li , Shiqi Yu

Loss of cortical integration and changes in the dynamics of electrophysiological brain signals characterize the transition from wakefulness towards unconsciousness. The common mechanism underlying these observations remains unknown. In this…

A regular approach to accounting for initial correlations, which allows to go beyond the unrealistic random phase (initial product state) approximation in deriving the evolution equations, is suggested. An exact homogeneous equation for a…

Statistical Mechanics · Physics 2017-02-28 Victor Los

Memory effects can be studied through a conditional past-future correlation, which measures departure with respect to a conditional past-future independence valid in a memoryless Markovian regime. In a quantum regime this property leads to…

Quantum Physics · Physics 2019-06-05 Adrian A. Budini