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Generating molecular graphs with desired chemical properties driven by deep graph generative models provides a very promising way to accelerate drug discovery process. Such graph generative models usually consist of two steps: learning…

Machine Learning · Statistics 2020-06-19 Chengxi Zang , Fei Wang

Industrial processes produce a considerable volume of data and thus information. Whether it is structured sensory data or semi- to unstructured textual data, the knowledge that can be derived from it is critical to the sustainable…

Information Retrieval · Computer Science 2024-01-03 Hasan Abu-Rasheed , Christian Weber , Johannes Zenkert , Roland Krumm , Madjid Fathi

Artificial intelligence (AI) has played an increasingly important role in chemical research. However, most models currently used in chemistry are specialist models that require training and tuning for specific tasks. A more generic and…

Computation and Language · Computer Science 2025-07-03 Zihan Zhao , Da Ma , Lu Chen , Liangtai Sun , Zihao Li , Yi Xia , Bo Chen , Hongshen Xu , Zichen Zhu , Su Zhu , Shuai Fan , Guodong Shen , Kai Yu , Xin Chen

The growing complexity and volume of climate science literature make it increasingly difficult for researchers to find relevant information across models, datasets, regions, and variables. This paper introduces a domain-specific Knowledge…

Computation and Language · Computer Science 2025-09-15 Mustapha Adamu , Qi Zhang , Huitong Pan , Longin Jan Latecki , Eduard C. Dragut

Knowledge graph reasoning (KGR), aiming to deduce new facts from existing facts based on mined logic rules underlying knowledge graphs (KGs), has become a fast-growing research direction. It has been proven to significantly benefit the…

Artificial Intelligence · Computer Science 2024-10-28 Ke Liang , Lingyuan Meng , Meng Liu , Yue Liu , Wenxuan Tu , Siwei Wang , Sihang Zhou , Xinwang Liu , Fuchun Sun

Graph transformation approaches have been successfully used to analyse and design chemical and biological systems. Here we build on top of a DPO framework, in which molecules are modelled as typed attributed graphs and chemical reactions…

Logic in Computer Science · Computer Science 2019-11-04 Jakob Lykke Andersen , Marc Hellmuth , Daniel Merkle , Nikolai Nøjgaard , Marco Peressotti

Knowledge Graphs (KG) provide us with a structured, flexible, transparent, cross-system, and collaborative way of organizing our knowledge and data across various domains in society and industrial as well as scientific disciplines. KGs…

Reasoning over temporal knowledge graphs (TKGs) is fundamental to improving the efficiency and reliability of intelligent decision-making systems and has become a key technological foundation for future artificial intelligence applications.…

Computation and Language · Computer Science 2026-01-05 Wang Xing , Wei Song , Siyu Lin , Chen Wu , Zhesi Li , Man Wang

Foundation models have shown remarkable success across scientific domains, yet their impact in chemistry remains limited due to the absence of diverse, large-scale, high-quality datasets that reflect the field's multifaceted nature. We…

Knowledge graphs (KGs) are gaining prominence in Healthcare AI, especially in drug discovery and pharmaceutical research as they provide a structured way to integrate diverse information sources, enhancing AI system interpretability. This…

Artificial Intelligence · Computer Science 2023-09-29 Satvik Garg , Shivam Parikh , Somya Garg

As data and knowledge expand rapidly, adopting systematic methodologies for ontology generation has become crucial. With the daily increases in data volumes and frequent content changes, the demand for databases to store and retrieve…

Software Engineering · Computer Science 2025-06-27 Srikar Reddy Gadusu , Larry Callahan , Samir Lababidi , Arunasri Nishtala , Sophia Healey , Hande McGinty

This paper presents an ontology design along with knowledge engineering, and multilingual semantic reasoning techniques to build an automated system for assimilating culinary information for Indian food in the form of a knowledge graph. The…

Artificial Intelligence · Computer Science 2024-09-04 Saransh Kumar Gupta , Lipika Dey , Partha Pratim Das , Ramesh Jain

In visual tasks, large teacher models capture essential features and deep information, enhancing performance. However, distilling this information into smaller student models often leads to performance loss due to structural differences and…

Computer Vision and Pattern Recognition · Computer Science 2024-05-17 Zhiwei Wang , Jun Huang , Longhua Ma , Chengyu Wu , Hongyu Ma

Artificial intelligence is transforming molecular and materials science, but its growing computational and data demands raise critical sustainability challenges. In this Perspective, we examine resource considerations across the AI-driven…

Graph is considered a promising way for managing building information. A new graphic form of IFC (Industry Foundation Classes) data has just been developed, referred to as IFC-Graph. However, understanding of IFC-Graph is insufficient,…

Databases · Computer Science 2025-02-11 Junxiang Zhu , Nicholas Nisbet , Mengtian Yin , Ran Wei , Ioannis Brilakis

Knowledge graphs have become the primary vehicle for data integration and are critical to the success of modern AI, but the diversity of KG modelling practices, from lightweight vocabularies to richly axiomatised ontologies, makes…

Artificial Intelligence · Computer Science 2026-05-26 Enrico Daga , Valentina Tamma , Terry Payne

Laboratory workflows in pharmaceutical and biomedical research encode substantial tacit knowledge -- expert judgment about failure conditions, decision branching logic, and contextual dependencies -- that remains inaccessible to protocol…

Virtually every sector of society is experiencing a dramatic growth in the volume of unstructured textual data that is generated and published, from news and social media online interactions, through open access scholarly communications and…

Computation and Language · Computer Science 2026-03-30 Vanni Zavarella

To enable materials databases supporting computational and experimental research, it is critical to develop platforms that both facilitate access to the data and provide the tools used to generate/analyze it - all while considering the…

Scientific research increasingly relies on specialized computational tools, yet effectively utilizing these tools demands substantial domain expertise. While Large Language Models (LLMs) show promise in tool automation, they struggle to…

Artificial Intelligence · Computer Science 2025-07-29 Keyan Ding , Jing Yu , Junjie Huang , Yuchen Yang , Qiang Zhang , Huajun Chen