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We propose a dynamical model depicting the interactions between DNA and a specific binding protein involving long range transmissions. The dynamics rely on the coupling between Hydrogen bonds formed between DNA and protein and between the…

Soft Condensed Matter · Physics 2016-07-07 Donny Dwiputra , Wahyu Hidayat , Freddy Permana Zen

Phase-separated biomolecular condensates exhibit a wide range of dynamical properties, which depend on the sequences of the constituent proteins and RNAs. However, it is unclear to what extent condensate dynamics can be tuned without also…

Biomolecules · Quantitative Biology 2024-07-31 Yaxin An , Michael A. Webb , William M. Jacobs

Nature has exhibited numerous soft-interactive botanical or zoological systems with self-adaptivenss or reconfigurable shape, however, artificial micro/nano materials of same merit are formidable due to material/structural limitations,…

Applied Physics · Physics 2020-06-16 Yufeng Tao

Fibre-reinforced hydrogels are promising materials for biomedical applications due to their strength, toughness, and tunability. However, it remains unclear how to design fibre-reinforced hydrogels for use in specific applications due to…

Soft Condensed Matter · Physics 2025-03-26 Matthew G. Hennessy , Tom Shearer , Axel C. Moore

We present an extensive experimental study of mode-I, steady, slow crack dynamics in gelatin gels. Taking advantage of the sensitivity of the elastic stiffness to gel composition and history we confirm and extend the model for fracture of…

Soft Condensed Matter · Physics 2009-11-11 Tristan Baumberger , Christiane Caroli , David Martina

We perform off-lattice, canonical ensemble molecular dynamics simulations of the self-assembly of long segmented copolymers consisting of alternating, tunably attractive and hydrophobic {\em binder} domains, connected by hydrophilic {\em…

Soft Condensed Matter · Physics 2015-07-21 Hamed Mortazavi , Cornelis Storm

Molecular dynamics simulations have been employed to study the formation of a physical (thermoreversible) gel by amphiphilic A-B-A triblock copolymers in aqueous solution. In order to mimic the structure of hydrogel-forming polypeptides…

Soft Condensed Matter · Physics 2007-05-23 Lei Guo , Erik Luijten

Elastic netwok models coarse grain proteins into a network of residue beads connected by springs. We add dissipative dynamics to this mechanical system by applying overdamped Langevin equations of motion to normal-mode vibrations of the…

Biological Physics · Physics 2015-06-05 Daniel R. Martin , Dmitry V. Matyushov

Advances in understanding chemical and physical driving forces in self-assembly allow the fabrication of unique nanoarchitectures with subwavelength building blocks as the basis for plasmonic and metamaterial devices. Chemical crosslinking…

Biomimetic hydrogels based on natural polymers are a promising class of biomaterial, mimicking the natural extra-cellular matrix of biological tissues and providing cues for cell attachment, proliferation and differentiation. With a view to…

Soft Condensed Matter · Physics 2016-10-25 David A. Head , Giuseppe Tronci , Stephen J. Russell , David J. Wood

The percentage and sequence of AT and GC base pairs and charges on the DNA backbone contribute significantly to the stiffness of DNA. This elastic property of DNA also changes with small interacting ligands. The single-molecule force…

Soft Condensed Matter · Physics 2017-02-02 Anurag Singh , Amar Nath Gupta

In this review, we discuss disruptive decoupled water splitting schemes, in which the concurrent production of hydrogen and oxygen in close proximity to each other in conventional electrolysis is replaced by time- or space-separated…

Applied Physics · Physics 2020-07-28 Avigail Landman , Gideon S. Grader , Avner Rothschild

Piezoionic hydrogels offer a route to mechanically driven bioelectronic interfaces, but their output is limited by rapid, symmetric ion redistribution that dissipates charge gradients. In biological electrocytes, efficient signal generation…

Mesoscale and Nanoscale Physics · Physics 2026-05-01 Tofayel Ahammad Ovee , Daniel Kroeger , Jean-François Louf

We report on rate-dependent fracture energy measurements over three decades of steady crack velocities in alginate and gelatin hydrogels. We evidence that, irrespective of gel thermo-reversibility, thermally activated "unzipping" of the…

Soft Condensed Matter · Physics 2009-11-13 T. Baumberger , O. Ronsin

Polyelectrolyte (PE) hydrogels can dynamically respond to external stimuli, such as changes in pH and temperature, which benefits their use for smart materials and nanodevices with tunable properties. We investigate equilibrium…

Soft Condensed Matter · Physics 2026-04-07 Jiaxing Yuan , Tine Curk

Dynamic structuring of water is a key player in a large class of processes underlying biochemical and technological developments today, the latter often involving electric fields. However, the anisotropic coupling between the water…

Soft Condensed Matter · Physics 2019-05-29 Andreas Baer , Zoran Miličević , David M. Smith , Ana-Sunčana Smith

We perform equilibrium Langevin dynamics simulations to understand the structure-viscoelasticity relationship of a dually crosslinked reversible polymer network. The cross-linking is achieved by introducing orthogonal crosslinkers (A and B)…

Soft Condensed Matter · Physics 2023-11-01 Mounika Gosika , Angel J. Moreno

Gels made of telechelic polymers connected by reversible crosslinkers are a versatile design platform for biocompatible viscoelastic materials. Their linear response to a step strain displays a fast, near-exponential relaxation when using…

Highly stretchable and self-healable supramolecular elastomers are promising materials for future soft electronics, biomimetic systems, and smart textiles, due to their dynamic cross-linking bonds. The dynamic or reversible nature of the…

Soft Condensed Matter · Physics 2024-01-23 Yikai Yin , Shaswat Mohanty , Christopher B. Cooper , Zhenan Bao , Wei Cai

Solutions of polymer chains are modelled using non-equilibrium Brownian dynamics simulations, with physically associative beads which form reversible crosslinks to establish a system-spanning physical gel network. Rheological properties…

Soft Condensed Matter · Physics 2024-06-19 Dominic Robe , Aritra Santra , Gareth H. McKinley , J. Ravi Prakash