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Dimension reduction (DR) techniques such as t-SNE, UMAP, and TriMAP have demonstrated impressive visualization performance on many real world datasets. One tension that has always faced these methods is the trade-off between preservation of…

Machine Learning · Computer Science 2021-08-27 Yingfan Wang , Haiyang Huang , Cynthia Rudin , Yaron Shaposhnik

Dimensionality reduction is a fundamental technique in machine learning and data analysis, enabling efficient representation and visualization of high-dimensional data. This paper explores five key methods: Principal Component Analysis…

Other Statistics · Statistics 2025-02-19 Yuan-chin Ivan Chang

Different unsupervised models for dimensionality reduction like PCA, LLE, Shannon's mapping, tSNE, UMAP, etc. work on different principles, hence, they are difficult to compare on the same ground. Although they are usually good for…

Methodology · Statistics 2024-05-10 Subhrajyoty Roy

We introduce "TriMap"; a dimensionality reduction technique based on triplet constraints, which preserves the global structure of the data better than the other commonly used methods such as t-SNE, LargeVis, and UMAP. To quantify the global…

Machine Learning · Computer Science 2022-03-29 Ehsan Amid , Manfred K. Warmuth

We first show that the commonly used dimensionality reduction (DR) methods such as t-SNE and LargeVis poorly capture the global structure of the data in the low dimensional embedding. We show this via a number of tests for the DR methods…

Machine Learning · Computer Science 2018-03-05 Ehsan Amid , Manfred K. Warmuth

Low-dimensional embeddings and visualizations are an indispensable tool for analysis of high-dimensional data. State-of-the-art methods, such as tSNE and UMAP, excel in unveiling local structures hidden in high-dimensional data and are…

Machine Learning · Computer Science 2023-02-01 Jonas Fischer , Rebekka Burkholz , Jilles Vreeken

Modeling data as being sampled from a union of independent subspaces has been widely applied to a number of real world applications. However, dimensionality reduction approaches that theoretically preserve this independence assumption have…

Machine Learning · Computer Science 2016-04-08 Devansh Arpit , Ifeoma Nwogu , Venu Govindaraju

Dimensionality reduction (DR) is characterized by two longstanding trade-offs. First, there is a global-local preservation tension: methods such as t-SNE and UMAP prioritize local neighborhood preservation, yet may distort global manifold…

Machine Learning · Computer Science 2026-04-06 Zeyang Huang , Angelos Chatzimparmpas , Thomas Höllt , Takanori Fujiwara

Dimension reduction (DR) is inherently non-unique: multiple embeddings can preserve the structure of high-dimensional data equally well while differing in layout or geometry. In this paper, we formally define the Rashomon set for DR -- the…

Machine Learning · Computer Science 2026-04-29 Yiyang Sun , Haiyang Huang , Gaurav Rajesh Parikh , Cynthia Rudin

Multidimensional scaling is a statistical process that aims to embed high dimensional data into a lower-dimensional space; this process is often used for the purpose of data visualisation. Common multidimensional scaling algorithms tend to…

Machine Learning · Computer Science 2022-02-25 Pierre Lambert , Cyril de Bodt , Michel Verleysen , John Lee

Dimensionality reduction methods such as t-SNE are designed to preserve local neighborhood structure but do not explicitly account for how probability mass is distributed, often leading to distortions of data density. We reformulate…

Machine Learning · Computer Science 2026-05-05 Maksim Kazanskii

Data visualisation helps understanding data represented by multiple variables, also called features, stored in a large matrix where individuals are stored in lines and variable values in columns. These data structures are frequently called…

Human-Computer Interaction · Computer Science 2022-07-25 Haseeb Younis , Paul Trust , Rosane Minghim

The vast majority of Dimensionality Reduction (DR) techniques rely on second-order statistics to define their optimization objective. Even though this provides adequate results in most cases, it comes with several shortcomings. The methods…

Computer Vision and Pattern Recognition · Computer Science 2017-08-21 Nikolaos Passalis , Anastasios Tefas

With the increasing availability of high-dimensional data, analysts often rely on exploratory data analysis to understand complex data sets. A key approach to exploring such data is dimensionality reduction, which embeds high-dimensional…

Machine Learning · Computer Science 2024-12-17 Pavlin G. Poličar , Blaž Zupan

Dimensionality reduction (DR) methods are commonly used for analyzing and visualizing multidimensional data. However, when data is a live streaming feed, conventional DR methods cannot be directly used because of their computational…

Graphics · Computer Science 2019-10-16 Takanori Fujiwara , Jia-Kai Chou , Shilpika , Panpan Xu , Liu Ren , Kwan-Liu Ma

We present a new technique for visualizing high-dimensional data called cluster MDS (cl-MDS), which addresses a common difficulty of dimensionality reduction methods: preserving both local and global structures of the original sample in a…

Graphics · Computer Science 2024-05-27 Patricia Hernández-León , Miguel A. Caro

We propose a new dimensionality reduction toolkit designed to address some of the challenges faced by traditional methods like UMAP and tSNE such as loss of global structure and computational efficiency. Built on the JAX framework, DiRe…

Machine Learning · Computer Science 2025-08-19 Alexander Kolpakov , Igor Rivin

Visualizing high dimensional data by projecting them into two or three dimensional space is one of the most effective ways to intuitively understand the data's underlying characteristics, for example their class neighborhood structure.…

Machine Learning · Computer Science 2020-04-06 Pitoyo Hartono

In ordinary Dimensionality Reduction (DR), each data instance in a high dimensional space (original space), or on a distance matrix denoting original space distances, is mapped to (projected onto) one point in a low dimensional space…

Computer Vision and Pattern Recognition · Computer Science 2022-06-28 Farshad Barahimi

With the development of information technology, we have witnessed an age of data explosion which produces a large variety of data filled with redundant information. Because dimension reduction is an essential tool which embeds…

Computer Vision and Pattern Recognition · Computer Science 2019-04-19 Huibing Wang , Jinjia Peng , Xianping Fu
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