English
Related papers

Related papers: ProtTeX-CC: Activating In-Context Learning in Prot…

200 papers

In-context learning (ICL) enhances the reasoning abilities of Large Language Models (LLMs) by prepending a few demonstrations. It motivates researchers to introduce more examples to provide additional contextual information for the…

Computation and Language · Computer Science 2025-05-27 Jun Gao , Qi Lv , Zili Wang , Tianxiang Wu , Ziqiang Cao , Wenjie Li

Subword tokenization introduces a computational layer in language models where many distinct token sequences decode to the same surface form and preserve meaning, yet induce different internal computations. Despite this non-uniqueness,…

Computation and Language · Computer Science 2026-01-14 Adrian Cosma , Stefan Ruseti , Emilian Radoi , Mihai Dascalu

Neural audio codecs, used as speech tokenizers, have demonstrated remarkable potential in the field of speech generation. However, to ensure high-fidelity audio reconstruction, neural audio codecs typically encode audio into long sequences…

Audio and Speech Processing · Electrical Eng. & Systems 2025-06-02 Wenrui Liu , Qian Chen , Wen Wang , Yafeng Chen , Jin Xu , Zhifang Guo , Guanrou Yang , Weiqin Li , Xiaoda Yang , Tao Jin , Minghui Fang , Jialong Zuo , Bai Jionghao , Zemin Liu

Scaling large language models by increasing parameters and training data is increasingly constrained by limited high-quality corpora and rising communication costs. This work explores an alternative axis: increasing per-token computation…

Computation and Language · Computer Science 2026-03-11 Boyi Zeng , Yiqin Hao , He Li , Shixiang Song , Feichen Song , Zitong Wang , Siyuan Huang , Yi Xu , ZiWei He , Xinbing Wang , Zhouhan Lin

Continual learning (CL) enables deep networks to acquire new knowledge while avoiding catastrophic forgetting. The powerful generalization ability of pre-trained models (PTMs), such as the Contrastive Language-Image Pre-training (CLIP)…

Computer Vision and Pattern Recognition · Computer Science 2025-12-22 Haodong Lu , Xinyu Zhang , Kristen Moore , Jason Xue , Lina Yao , Anton van den Hengel , Dong Gong

Pretraining Neural Language Models (NLMs) over a large corpus involves chunking the text into training examples, which are contiguous text segments of sizes processable by the neural architecture. We highlight a bias introduced by this…

Computation and Language · Computer Science 2022-03-22 Yoav Levine , Noam Wies , Daniel Jannai , Dan Navon , Yedid Hoshen , Amnon Shashua

Designing protein sequences that fold into a target 3D structure, known as protein inverse folding, is a fundamental challenge in protein engineering. While recent deep learning methods have achieved impressive performance by recovering…

Biomolecules · Quantitative Biology 2025-06-03 Mengdi Liu , Xiaoxue Cheng , Zhangyang Gao , Hong Chang , Cheng Tan , Shiguang Shan , Xilin Chen

Understanding protein solubility is essential for their functional applications. Computational methods for predicting protein solubility are crucial for reducing experimental costs and enhancing the efficiency and success rates of protein…

Quantitative Methods · Quantitative Biology 2024-07-01 Yang Tan , Jia Zheng , Liang Hong , Bingxin Zhou

Despite advanced token compression techniques, existing multimodal large language models (MLLMs) still struggle with hour-long video understanding. In this work, we propose Video-XL-Pro, an efficient method for extremely long video…

Computer Vision and Pattern Recognition · Computer Science 2025-04-29 Xiangrui Liu , Yan Shu , Zheng Liu , Ao Li , Yang Tian , Bo Zhao

Bimodal software analysis initially appeared to be within reach with the advent of large language models. Unfortunately, the complex interplay of natural language text and code in software engineering, presents unique challenges that…

Software Engineering · Computer Science 2024-10-25 Xunzhu Tang , Liran Wang , Yonghui Liu , Linzheng Chai , Jian Yang , Zhoujun Li , Haoye Tian , Jacques Klein , Tegawende F. Bissyande

Multilingual generative models obtain remarkable cross-lingual in-context learning capabilities through pre-training on large-scale corpora. However, they still exhibit a performance bias toward high-resource languages and learn isolated…

Computation and Language · Computer Science 2024-06-13 Chong Li , Shaonan Wang , Jiajun Zhang , Chengqing Zong

Protein language models (pLMs), pre-trained via causal language modeling on protein sequences, have been a promising tool for protein sequence design. In real-world protein engineering, there are many cases where the amino acids in the…

Machine Learning · Computer Science 2023-03-30 Youhan Lee , Hasun Yu

Large Language Models (LLMs) have demonstrated exceptional abilities across a broad range of language-related tasks, including generating solutions to complex reasoning problems. An effective technique to enhance LLM performance is…

Computation and Language · Computer Science 2024-12-25 Shuzhang Cai , Twumasi Mensah-Boateng , Xander Kuksov , Jing Yuan , Shaojie Tang

Chain-of-Thought (CoT) prompting has significantly advanced task-solving capabilities in natural language processing with large language models. Unlike standard prompting, CoT encourages the model to generate intermediate reasoning steps,…

In recent years, significant progress has been made in the field of protein function prediction with the development of various machine-learning approaches. However, most existing methods formulate the task as a multi-classification…

Quantitative Methods · Quantitative Biology 2024-04-23 Hadi Abdine , Michail Chatzianastasis , Costas Bouyioukos , Michalis Vazirgiannis

Understanding long text is of great demands in practice but beyond the reach of most language-image pre-training (LIP) models. In this work, we empirically confirm that the key reason causing such an issue is that the training images are…

Computer Vision and Pattern Recognition · Computer Science 2024-11-14 Wei Wu , Kecheng Zheng , Shuailei Ma , Fan Lu , Yuxin Guo , Yifei Zhang , Wei Chen , Qingpei Guo , Yujun Shen , Zheng-Jun Zha

In-Context Learning (ICL) enables pretrained LLMs to adapt to downstream tasks by conditioning on a small set of input-output demonstrations, without any parameter updates. Although there have been many theoretical efforts to explain how…

Machine Learning · Computer Science 2026-03-23 Xuhan Tong , Yuchen Zeng , Jiawei Zhang

The parallels between protein sequences and natural language in their sequential structures have inspired the application of large language models (LLMs) to protein understanding. Despite the success of LLMs in NLP, their effectiveness in…

Quantitative Methods · Quantitative Biology 2024-07-09 Yiqing Shen , Zan Chen , Michail Mamalakis , Luhan He , Haiyang Xia , Tianbin Li , Yanzhou Su , Junjun He , Yu Guang Wang

In-context learning is a surprising and important phenomenon that emerged when modern language models were scaled to billions of learned parameters. Without modifying a large language model's weights, it can be tuned to perform various…

Computation and Language · Computer Science 2023-03-15 Noam Wies , Yoav Levine , Amnon Shashua

Large Language Models (LLMs) have demonstrated remarkable efficacy in text embedding, yet current adaptation methods like LoRA face significant bottlenecks in computational efficiency and cross-architecture transferability. Whenever a new…

Computation and Language · Computer Science 2026-05-28 Yu-Che Tsai , Kuan-Yu Chen , Yuan-Hao Chen , Yu-Han Chang , Ching-Yu Tsai , Yu-Hsiang Chuang , Shou-De Lin
‹ Prev 1 4 5 6 7 8 10 Next ›