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Molecular property prediction is a fundamental task in computational chemistry with critical applications in drug discovery and materials science. While recent works have explored Large Language Models (LLMs) for this task, they primarily…

Computer Vision and Pattern Recognition · Computer Science 2025-07-08 Deepan Adak , Yogesh Singh Rawat , Shruti Vyas

Vessel dynamics simulation is vital in studying the relationship between geometry and vascular disease progression. Reliable dynamics simulation relies on high-quality vascular meshes. Most of the existing mesh generation methods highly…

Image and Video Processing · Electrical Eng. & Systems 2024-12-03 Dengqiang Jia , Xinnian Yang , Xiaosong Xiong , Shijie Huang , Feiyu Hou , Li Qin , Kaicong Sun , Kannie Wai Yan Chan , Dinggang Shen

Virtual screening is a technique used in drug discovery to select the most promising molecules to test in a lab. To perform virtual screening, we need a large set of molecules as input, and storing these molecules can become an issue. In…

Computational Engineering, Finance, and Science · Computer Science 2024-05-01 Gianmarco Accordi , Davide Gadioli , Giorgio Seguini , Andrea R. Beccari , Gianluca Palermo

Prediction of protein-ligand interactions (PLI) plays a crucial role in drug discovery as it guides the identification and optimization of molecules that effectively bind to target proteins. Despite remarkable advances in deep…

Biomolecules · Quantitative Biology 2023-07-18 Seokhyun Moon , Sang-Yeon Hwang , Jaechang Lim , Woo Youn Kim

Video quality is a primary concern for video service providers. In recent years, the techniques of video quality assessment (VQA) based on deep convolutional neural networks (CNNs) have been developed rapidly. Although existing works…

Image and Video Processing · Electrical Eng. & Systems 2022-10-11 Ao-Xiang Zhang , Yuan-Gen Wang , Weixuan Tang , Leida Li , Sam Kwong

Development of new functional ceramics is important for several applications, including electrochemical batteries and fuel cells. Computational prescreening and selection of such materials can help discover novel materials but is…

Materials Science · Physics 2025-02-11 Keisuke Kameda , Takaaki Ariga , Kazuma Ito , Manabu Ihara , Sergei Manzhos

Modern deep learning models capture the semantics of complex data by transforming them into high-dimensional embedding vectors. Emerging applications, such as retrieval-augmented generation, use approximate nearest neighbor (ANN) search in…

Databases · Computer Science 2025-10-01 Guoyu Hu , Shaofeng Cai , Tien Tuan Anh Dinh , Zhongle Xie , Cong Yue , Gang Chen , Beng Chin Ooi

A major public health issue is the growing resistance of bacteria to antibiotics. An important part of the needed response is the discovery and development of new antimicrobial strategies. These require the screening of potential new drugs,…

Applications · Statistics 2026-02-19 Byran Smucker , Benjamin Brennan , Emily Rego , Meng Wu , Zhihong Lin , Brian Ahmer , Blake Peterson

Modern deep learning models have the ability to generate high-dimensional vectors whose similarity reflects semantic resemblance. Thus, similarity search, i.e., the operation of retrieving those vectors in a large collection that are…

Machine Learning · Computer Science 2024-04-04 Mariano Tepper , Ishwar Singh Bhati , Cecilia Aguerrebere , Mark Hildebrand , Ted Willke

Accurate prediction of Drug-Target Affinity (DTA) is crucial for reducing experimental costs and accelerating early screening in computational drug discovery. While sequence-based deep learning methods avoid reliance on costly 3D…

Machine Learning · Computer Science 2025-11-03 Minghui Li , Yuanhang Wang , Peijin Guo , Wei Wan , Shengshan Hu , Shengqing Hu

Support vector machines and kernel methods have recently gained considerable attention in chemoinformatics. They offer generally good performance for problems of supervised classification or regression, and provide a flexible and…

Quantitative Methods · Quantitative Biology 2007-08-02 Pierre Mahé , Jean-Philippe Vert

Support vector machines (SVMs) have been successful in solving many computer vision tasks including image and video category recognition especially for small and mid-scale training problems. The principle of these non-parametric models is…

Computer Vision and Pattern Recognition · Computer Science 2019-12-13 Hichem Sahbi

By cropping high-resolution images into local tiles and encoding them independently, High-Resolution Large Vision-Language Models (HR-LVLMs) have demonstrated remarkable fine-grained visual understanding capabilities. However, this…

Computer Vision and Pattern Recognition · Computer Science 2025-09-30 Xu Li , Yuxuan Liang , Xiaolei Chen , Yi Zheng , Haotian Chen , Bin Li , Xiangyang Xue

Vision-language models (VLMs) have demonstrated impressive multimodal comprehension capabilities and are being deployed in an increasing number of online video understanding applications. While recent efforts extensively explore advancing…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-01-08 Shengyuan Ye , Bei Ouyang , Tianyi Qian , Liekang Zeng , Mu Yuan , Xiaowen Chu , Weijie Hong , Xu Chen

We propose a novel approach for deep learning-based Multi-View Stereo (MVS). For each pixel in the reference image, our method leverages a deep architecture to search for the corresponding point in the source image directly along the…

Computer Vision and Pattern Recognition · Computer Science 2022-12-14 Christian Sormann , Emanuele Santellani , Mattia Rossi , Andreas Kuhn , Friedrich Fraundorfer

We introduce a new ligand-based virtual screening (LBVS) framework that uses piecewise linear (PL) Morse theory to predict ligand binding potential. We model ligands as simplicial complexes via a pruned Delaunay triangulation, and catalogue…

Quantitative Methods · Quantitative Biology 2025-03-07 Alexander M. Tanaka , Aras T. Asaad , Richard Cooper , Vidit Nanda

In structure-based drug design, accurately estimating the binding affinity between a candidate ligand and its protein receptor is a central challenge. Recent advances in artificial intelligence, particularly deep learning, have demonstrated…

Biomolecules · Quantitative Biology 2025-09-18 Md Masud Rana , Farjana Tasnim Mukta , Duc D. Nguyen

Recently, researchers in Machine Learning algorithms, Computer Vision scientists, engineers and others, showed a growing interest in 3D simulators as a mean to artificially create experimental settings that are very close to those in the…

Computer Vision and Pattern Recognition · Computer Science 2022-10-18 Enrico Meloni , Luca Pasqualini , Matteo Tiezzi , Marco Gori , Stefano Melacci

Molecular docking is a cornerstone of drug discovery to unveil the mechanism of ligand-receptor interactions. With the recent development of deep learning in the field of artificial intelligence, innovative methods were developed for…

Chemical Physics · Physics 2025-10-29 Xuhan Liu , Baohua Zhang , Hong Zhang , Yi Qin Gao

Fine-grained image retrieval, which aims to find images containing specific object components and assess their detailed states, is critical in fields like security and industrial inspection. However, conventional methods face significant…

Computer Vision and Pattern Recognition · Computer Science 2025-11-26 Kehan Wang , Tingqiong Cui , Yang Zhang , Yu Chen , Shifeng Wu , Zhenzhang Li
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