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Immunohistochemical (IHC) staining enables precise molecular profiling of protein expression, with over 200 clinically available antibody-based tests in modern pathology. However, comprehensive IHC analysis is frequently limited by…

Computer Vision and Pattern Recognition · Computer Science 2026-02-27 Fuqiang Chen , Ranran Zhang , Wanming Hu , Deboch Eyob Abera , Yue Peng , Boyun Zheng , Yiwen Sun , Jing Cai , Wenjian Qin

Real-time gas classification is an essential issue and challenge in applications such as food and beverage quality control, accident prevention in industrial environments, for instance. In recent years, the Deep Learning (DL) models have…

Signal Processing · Electrical Eng. & Systems 2020-10-05 Juan C. Rodriguez Gamboa , Adenilton J. da Silva , Ismael C. S. Araujo , Eva Susana Albarracin E. , Cristhian M. Duran A

Drug discovery represents a time-consuming and financially intensive process, and virtual screening can accelerate it. Scoring functions, as one of the tools guiding virtual screening, have their precision closely tied to screening…

Machine Learning · Computer Science 2026-01-13 Haotian Gao , Xiangying Zhang , Jingyuan Li , Xinchong Chen , Haojie Wang , Yifei Qi , Renxiao Wang

Molecular docking is critical to structure-based virtual screening, yet the throughput of such workflows is limited by the expensive optimization of scoring functions involved in most docking algorithms. We explore how machine learning can…

Biomolecules · Quantitative Biology 2024-09-04 Bowen Jing , Tommi Jaakkola , Bonnie Berger

Deep learning promises to dramatically improve scoring functions for molecular docking, leading to substantial advances in binding pose prediction and virtual screening. To train scoring functions-and to perform molecular docking-one must…

Biomolecules · Quantitative Biology 2023-12-04 Patricia Suriana , Ron O. Dror

Drug combination therapy has become a increasingly promising method in the treatment of cancer. However, the number of possible drug combinations is so huge that it is hard to screen synergistic drug combinations through wet-lab…

Machine Learning · Computer Science 2021-07-07 J. Wang , X. Liu , S. Shen , L. Deng , H. Liu*

Recovery of an underlying scene geometry from multiview images stands as a long-time challenge in computer vision research. The recent promise leverages neural implicit surface learning and differentiable volume rendering, and achieves both…

Computer Vision and Pattern Recognition · Computer Science 2023-03-02 Zhihao Liang , Zhangjin Huang , Changxing Ding , Kui Jia

Cervical cancer, one of the most common fatal cancers among women, can be prevented by regular screening to detect any precancerous lesions at early stages and treat them. Pap smear test is a widely performed screening technique for early…

Image and Video Processing · Electrical Eng. & Systems 2021-08-31 Md Mamunur Rahaman , Chen Li , Yudong Yao , Frank Kulwa , Xiangchen Wu , Xiaoyan Li , Qian Wang

Despite recent advances in protein-ligand structure prediction, deep learning methods remain limited in their ability to accurately predict binding affinities, particularly for novel protein targets dissimilar from the training set. In…

Quantitative Methods · Quantitative Biology 2025-12-04 Michael Brocidiacono , James Wellnitz , Konstantin I. Popov , Alexander Tropsha

Molecular docking is a key computational tool utilized to predict the binding conformations of small molecules to protein targets, which is fundamental in the design of novel drugs. Despite recent advancements in geometric deep…

Biomolecules · Quantitative Biology 2023-12-01 Jiaxian Yan , Zaixi Zhang , Kai Zhang , Qi Liu

Speculative decoding has proven effective for accelerating inference in Large Language Models (LLMs), yet its extension to Vision-Language Models (VLMs) remains limited by the computational burden and semantic inconsistency introduced by…

Machine Learning · Computer Science 2025-11-21 Zhinan Xie , Peisong Wang , Shuang Qiu , Jian Cheng

Cybersickness is a common ailment associated with virtual reality (VR) user experiences. Several automated methods exist based on machine learning (ML) and deep learning (DL) to detect cybersickness. However, most of these cybersickness…

Human-Computer Interaction · Computer Science 2023-02-08 Ripan Kumar Kundu , Rifatul Islam , John Quarles , Khaza Anuarul Hoque

The past decade has witnessed great success of deep learning technology in many disciplines, especially in computer vision and image processing. However, deep learning-based video coding remains in its infancy. This paper reviews the…

Multimedia · Computer Science 2020-03-13 Dong Liu , Yue Li , Jianping Lin , Houqiang Li , Feng Wu

Structure-based drug design (SBDD) leverages the three-dimensional geometry of proteins to identify potential drug candidates. Traditional approaches, rooted in physicochemical modeling and domain expertise, are often resource-intensive.…

Quantitative Methods · Quantitative Biology 2024-11-19 Zaixi Zhang , Jiaxian Yan , Yining Huang , Qi Liu , Enhong Chen , Mengdi Wang , Marinka Zitnik

Structure-based virtual screening aims to identify high-affinity ligands by estimating binding free energies between proteins and small molecules. However, the conformational flexibility of both proteins and ligands challenges conventional…

Biomolecules · Quantitative Biology 2025-07-15 Pei-Kun Yang

The rapid growth of hyperspectral data archives in remote sensing (RS) necessitates effective compression methods for storage and transmission. Recent advances in learning-based hyperspectral image (HSI) compression have significantly…

Computer Vision and Pattern Recognition · Computer Science 2026-03-30 Martin Hermann Paul Fuchs , Behnood Rasti , Begüm Demir

Vision Transformers have enabled recent attention-based Deep Learning (DL) architectures to achieve remarkable results in Computer Vision (CV) tasks. However, due to the extensive computational resources required, these architectures are…

Computer Vision and Pattern Recognition · Computer Science 2023-03-29 Lotfi Abdelkrim Mecharbat , Hadjer Benmeziane , Hamza Ouarnoughi , Smail Niar

Wearable and unobtrusive monitoring and prediction of epileptic seizures has the potential to significantly increase the life quality of patients, but is still an unreached goal due to challenges of real-time detection and wearable devices…

Neural and Evolutionary Computing · Computer Science 2022-01-25 Una Pale , Tomas Teijeiro , David Atienza

Recently, deep learning has been utilized to solve video recognition problem due to its prominent representation ability. Deep neural networks for video tasks is highly customized and the design of such networks requires domain experts and…

Computer Vision and Pattern Recognition · Computer Science 2020-11-04 Zihao Wang , Chen Lin , Lu Sheng , Junjie Yan , Jing Shao

Sampling physically valid ligand-binding poses remains a major challenge in molecular docking, particularly for unseen or structurally diverse targets. We introduce PocketVina, a fast and memory-efficient, search-based docking framework…

Quantitative Methods · Quantitative Biology 2025-06-26 Ahmet Sarigun , Bora Uyar , Vedran Franke , Altuna Akalin