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Current Graph Neural Networks (GNN) architectures generally rely on two important components: node features embedding through message passing, and aggregation with a specialized form of pooling. The structural (or topological) information…

Machine Learning · Computer Science 2022-06-01 Cédric Vincent-Cuaz , Rémi Flamary , Marco Corneli , Titouan Vayer , Nicolas Courty

Deep embedding learning becomes more attractive for discriminative feature learning, but many methods still require hard-class mining, which is computationally complex and performance-sensitive. To this end, we propose Adaptive Large Margin…

Computer Vision and Pattern Recognition · Computer Science 2018-06-06 Binghui Chen , Weihong Deng

Determining the 3D structures of proteins is essential in understanding their behavior in the cellular environment. Computational methods of predicting protein structures have advanced, but assessing prediction accuracy remains a challenge.…

Biomolecules · Quantitative Biology 2024-07-29 Musa Azeem , Homayoun Valafar

Attributions aim to identify input pixels that are relevant to the decision-making process. A popular approach involves using modified backpropagation (BP) rules to reverse decisions, which improves interpretability compared to the original…

Machine Learning · Computer Science 2025-03-17 Guanhua Zheng , Jitao Sang , Changsheng Xu

Grain segmentation of sandstone that is partitioning the grain from its surrounding matrix/cement in the thin section is the primary step for computer-aided mineral identification and sandstone classification. The microscopic images of…

Computer Vision and Pattern Recognition · Computer Science 2021-11-16 Rajdeep Das , Ajoy Mondal , Tapan Chakraborty , Kuntal Ghosh

The decentralized gradient descent (DGD) algorithm, and its sibling, diffusion, are workhorses in decentralized machine learning, distributed inference and estimation, and multi-agent coordination. We propose a novel, principled framework…

Signal Processing · Electrical Eng. & Systems 2025-06-04 Erik G. Larsson , Nicolo Michelusi

Data-driven discovery of governing equations is of great significance for helping us understand intrinsic mechanisms and build physical models. Recently, numerous highly innovative algorithms have emerged, aimed at inversely discovering the…

Data Analysis, Statistics and Probability · Physics 2024-03-29 Wenjun Ma , Jun Zhang , Kaikai Feng , Haoyun Xing , Dongsheng Wen

This paper considers the problem of nonlinear dimensionality reduction. Unlike existing methods, such as LLE, ISOMAP, which attempt to unfold the true manifold in the low dimensional space, our algorithm tries to preserve the nonlinear…

Computer Vision and Pattern Recognition · Computer Science 2019-02-15 Xu Zhao , Zongli Jiang

In this work, we explore heuristics for the Adjacency Graph Packing problem, which can be applied to the Double Cut and Join (DCJ) Distance Problem. The DCJ is a rearrangement operation and the distance problem considering it is a well…

Quantitative Methods · Quantitative Biology 2025-01-15 Gabriel Siqueira , Alexsandro Oliveira Alexandrino , Andre Rodrigues Oliveira , Zanoni Dias

Weight pruning is a technique to make Deep Neural Network (DNN) inference more computationally efficient by reducing the number of model parameters over the course of training. However, most weight pruning techniques generally does not…

Machine Learning · Computer Science 2022-02-03 Bradley McDanel , Helia Dinh , John Magallanes

The Angular Constrained Minimum Spanning Tree Problem ($\alpha$-MSTP) is defined in terms of a complete undirected graph $G=(V,E)$ and an angle $\alpha \in (0,2\pi]$. Vertices of $G$ define points in the Euclidean plane while edges, the…

Optimization and Control · Mathematics 2020-05-26 Alexandre Salles da Cunha

Particulate matter (PM) is a class of malicious environmental pollutants known to be detrimental to human health. Regulatory efforts aimed at curbing PM levels in different countries often require high resolution space-time maps that can…

Applications · Statistics 2016-04-15 Abhirup Datta , Sudipto Banerjee , Andrew O. Finley , Nicholas A. S. Hamm , Martijn Schaap

Distance metric learning is successful in discovering intrinsic relations in data. However, most algorithms are computationally demanding when the problem size becomes large. In this paper, we propose a discriminative metric learning…

Machine Learning · Computer Science 2019-05-15 Jun Li , Xun Lin , Xiaoguang Rui , Yong Rui , Dacheng Tao

We present the Branch-and-Bound Performance Estimation Programming (BnB-PEP), a unified methodology for constructing optimal first-order methods for convex and nonconvex optimization. BnB-PEP poses the problem of finding the optimal…

Optimization and Control · Mathematics 2023-06-09 Shuvomoy Das Gupta , Bart P. G. Van Parys , Ernest K. Ryu

Due to nonholonomic dynamics, the motion planning of nonholonomic robots is always a difficult problem. This letter presents a Discrete States-based Trajectory Planning(DSTP) algorithm for autonomous nonholonomic robots. The proposed…

Robotics · Computer Science 2023-02-20 Ziyi Zou , Ziang Zhang , Zhen Lu , Xiang Li , You Wang , Jie Hao , Guang Li

The Dynamical Graph Grammar (DGG) formalism can describe complex system dynamics with graphs that are mapped into a master equation. An exact stochastic simulation algorithm may be used, but it is slow for large systems. To overcome this…

Quantitative Methods · Quantitative Biology 2024-07-16 Eric Medwedeff , Eric Mjolsness

In this paper, we propose the approximate Bregman proximal gradient algorithm (ABPG) for solving composite nonconvex optimization problems. ABPG employs a new distance that approximates the Bregman distance, making the subproblem of ABPG…

Optimization and Control · Mathematics 2024-11-25 Shota Takahashi , Akiko Takeda

The problem of recovering the configuration of points from their partial pairwise distances, referred to as the Euclidean Distance Matrix Completion (EDMC) problem, arises in a broad range of applications, including sensor network…

Optimization and Control · Mathematics 2026-05-07 Chandler Smith , HanQin Cai , Abiy Tasissa

Graph Neural Networks usually rely on the assumption that the graph topology is available to the network as well as optimal for the downstream task. Latent graph inference allows models to dynamically learn the intrinsic graph structure of…

Machine Learning · Computer Science 2023-06-28 Haitz Sáez de Ocáriz Borde , Anees Kazi , Federico Barbero , Pietro Liò

Unstructured neural network pruning algorithms have achieved impressive compression rates. However, the resulting - typically irregular - sparse matrices hamper efficient hardware implementations, leading to additional memory usage and…

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