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Related papers: 3D Plant Root Skeleton Detection and Extraction

200 papers

Agricultural production is facing severe challenges in the next decades induced by climate change and the need for sustainability, reducing its impact on the environment. Advancements in field management through non-chemical weeding by…

Computer Vision and Pattern Recognition · Computer Science 2025-08-12 Elias Marks , Jonas Bömer , Federico Magistri , Anurag Sah , Jens Behley , Cyrill Stachniss

This paper describes a method for inferring three-dimensional (3D) plant branch structures that are hidden under leaves from multi-view observations. Unlike previous geometric approaches that heavily rely on the visibility of the branches…

Computer Vision and Pattern Recognition · Computer Science 2018-04-26 Takahiro Isokane , Fumio Okura , Ayaka Ide , Yasuyuki Matsushita , Yasushi Yagi

Plant developmental plasticity, particularly in root system architecture, is fundamental to understanding adaptability and agricultural sustainability. ChronoRoot 2.0 builds upon established low-cost hardware while significantly enhancing…

Modern spatial microscopy has provided developmental biology with powerful research tools. However, the recent significant technological breakthroughs have inevitably led to technical "bottlenecks" for the application of the new procedures…

Quantitative Methods · Quantitative Biology 2012-05-02 Ivan V. Rudskiy , Nadejda V. Khodorova

Segmenting tree structures is common in several image processing applications. In medical image analysis, reliable segmentations of airways, vessels, neurons and other tree structures can enable important clinical applications. We present a…

Computer Vision and Pattern Recognition · Computer Science 2017-08-08 Raghavendra Selvan , Jens Petersen , Jesper H. Pedersen , Marleen de Bruijne

Minirhizotron technology is widely used for studying the development of roots. Such systems collect visible-wavelength color imagery of plant roots in-situ by scanning an imaging system within a clear tube driven into the soil. Automated…

Computer Vision and Pattern Recognition · Computer Science 2020-07-02 Weihuang Xu , Guohao Yu , Alina Zare , Brendan Zurweller , Diane Rowland , Joel Reyes-Cabrera , Felix B Fritschi , Roser Matamala , Thomas E. Juenger

In this work, we present a method to extract the skeleton of a self-occluded tree canopy by estimating the unobserved structures of the tree. A tree skeleton compactly describes the topological structure and contains useful information such…

Robotics · Computer Science 2023-11-14 Chung Hee Kim , George Kantor

Accurate 3D modelling of grapevines is crucial for precision viticulture, particularly for informed pruning decisions and automated management techniques. However, the intricate structure of grapevines poses significant challenges for…

Other Quantitative Biology · Quantitative Biology 2025-03-03 Harry Dobbs , Casey Peat , Oliver Batchelor , James Atlas , Richard Green

The growing complexity of spatial and structural information in 3D data makes data inspection and visualization a challenging task. We describe a method to create a planar embedding of 3D treelike structures using their skeleton…

Graphics · Computer Science 2022-02-23 Ping Hu , Saeed Boorboor , Joseph Marino , Arie E. Kaufman

Deep learning techniques involving image processing and data analysis are constantly evolving. Many domains adapt these techniques for object segmentation, instantiation and classification. Recently, agricultural industries adopted those…

Computer Vision and Pattern Recognition · Computer Science 2019-03-21 Dmitry Kuznichov , Alon Zvirin , Yaron Honen , Ron Kimmel

The use of multiple camera technologies in a combined multimodal monitoring system for plant phenotyping offers promising benefits. Compared to configurations that only utilize a single camera technology, cross-modal patterns can be…

Computer Vision and Pattern Recognition · Computer Science 2024-07-04 Eric Stumpe , Gernot Bodner , Francesco Flagiello , Matthias Zeppelzauer

The work proposes an image segmentation algorithm that isolates slender regions in three-dimensional microstructures. Characterizing slender regions in material microstructures is an extremely important aspect in material science because…

Data Analysis, Statistics and Probability · Physics 2025-03-13 Vinit Vijay Deshpande , Romana Piat

The ability to automatically build 3D digital twins of plants from images has countless applications in agriculture, environmental science, robotics, and other fields. However, current 3D reconstruction methods fail to recover complete…

Computer Vision and Pattern Recognition · Computer Science 2026-01-23 Albert J. Zhai , Xinlei Wang , Kaiyuan Li , Zhao Jiang , Junxiong Zhou , Sheng Wang , Zhenong Jin , Kaiyu Guan , Shenlong Wang

In this paper, we present a deep-learning based method for estimating the 3D structure of a bone from a pair of 2D X-ray images. Our triplet loss-trained neural network selects the most closely matching 3D bone shape from a predefined set…

Computer Vision and Pattern Recognition · Computer Science 2020-10-12 Jana Čavojská , Julian Petrasch , Nicolas J. Lehmann , Agnès Voisard , Peter Böttcher

Weed control is a critical challenge in modern agriculture, as weeds compete with crops for essential nutrient resources, significantly reducing crop yield and quality. Traditional weed control methods, including chemical and mechanical…

Computer Vision and Pattern Recognition · Computer Science 2025-02-11 Dingning Liu , Jinzhe Li , Haoyang Su , Bei Cui , Zhihui Wang , Qingbo Yuan , Wanli Ouyang , Nanqing Dong

Understanding plant root systems is critical for advancing research in soil-plant interactions, nutrient uptake, and overall plant health. However, accurate imaging of roots in subterranean environments remains a persistent challenge due to…

Computer Vision and Pattern Recognition · Computer Science 2026-01-12 Shubham Agarwal , Ofek Nourian , Michael Sidorov , Sharon Chemweno , Ofer Hadar , Naftali Lazarovitch , Jhonathan E. Ephrath

Automation and robotisation of the agricultural sector are seen as a viable solution to socio-economic challenges faced by this industry. This technology often relies on intelligent perception systems providing information about crops,…

Computer Vision and Pattern Recognition · Computer Science 2021-11-29 Justin Le Louëdec , Grzegorz Cielniak

Crop yield estimation is a relevant problem in agriculture, because an accurate yield estimate can support farmers' decisions on harvesting or precision intervention. Robots can help to automate this process. To do so, they need to be able…

Computer Vision and Pattern Recognition · Computer Science 2025-06-27 Matteo Sodano , Federico Magistri , Elias Marks , Fares Hosn , Aibek Zurbayev , Rodrigo Marcuzzi , Meher V. R. Malladi , Jens Behley , Cyrill Stachniss

3D phenotyping of plants plays a crucial role for understanding plant growth, yield prediction, and disease control. We present a pipeline capable of generating high-quality 3D reconstructions of individual agricultural plants. To acquire…

Computer Vision and Pattern Recognition · Computer Science 2025-10-20 Andre Rochow , Jonas Marcic , Svetlana Seliunina , Sven Behnke

Automated phenotyping of plants for breeding and plant studies promises to provide quantitative metrics on plant traits at a previously unattainable observation frequency. Developers of tools for performing high-throughput phenotyping are,…

Computer Vision and Pattern Recognition · Computer Science 2024-03-04 Katherine Margaret Frances James , Karoline Heiwolt , Daniel James Sargent , Grzegorz Cielniak