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We introduce a Retrieval-Augmented Generation (RAG) system for translating user questions into accurate federated SPARQL queries over bioinformatics knowledge graphs (KGs) leveraging Large Language Models (LLMs). To enhance accuracy and…

Advances in large language models have accelerated progress in text-to-SQL, methods for converting natural language queries into valid SQL queries. A key bottleneck for developing generalizable text-to-SQL models is the lack of large-scale…

Information Retrieval · Computer Science 2026-02-27 Cornelius Wolff , Daniel Gomm , Madelon Hulsebos

This document defines extensions of the RDF data model and of the SPARQL query language that capture an alternative approach to represent statement-level metadata. While this alternative approach is backwards compatible with RDF reification…

Databases · Computer Science 2021-12-17 Olaf Hartig , Bryan Thompson

Retrieval-Augmented Generation (RAG) grounds large language models (LLMs) in external evidence, but fails when retrieved sources conflict or contain outdated or subjective information. Prior work address these issues independently but lack…

Computation and Language · Computer Science 2025-12-19 Shubham Mishra , Samyek Jain , Gorang Mehrishi , Shiv Tiwari , Harsh Sharma , Pratik Narang , Dhruv Kumar

Retrieval-Augmented Language Models boost task performance, owing to the retriever that provides external knowledge. Although crucial, the retriever primarily focuses on semantics relevance, which may not always be effective for generation.…

Computation and Language · Computer Science 2026-02-03 Yilong Xu , Jinhua Gao , Xiaoming Yu , Yuanhai Xue , Baolong Bi , Huawei Shen , Xueqi Cheng

We study generative modeling of graphs with recurring subgraph motifs. We propose Flowette, a continuous flow matching framework that employs a graph neural network-based transformer to learn a velocity field over graph representations with…

Machine Learning · Computer Science 2026-05-19 Asiri Wijesinghe , Sevvandi Kandanaarachchi , Daniel M. Steinberg , Cheng Soon Ong

Retrieval-Augmented Generation (RAG) has significantly mitigated the hallucinations of Large Language Models (LLMs) by grounding the generation with external knowledge. Recent extensions of RAG to graph-based retrieval offer a promising…

Machine Learning · Computer Science 2025-09-23 Jialin Chen , Houyu Zhang , Seongjun Yun , Alejandro Mottini , Rex Ying , Xiang Song , Vassilis N. Ioannidis , Zheng Li , Qingjun Cui

SPARQL query rewriting is a fundamental mechanism for uniformly querying heterogeneous ontologies in the Linked Data Web. However, the complexity of ontology alignments, particularly rich correspondences (c : c), makes this process…

Databases · Computer Science 2025-12-08 Anicet Lepetit Ondo , Laurence Capus , Mamadou Bousso

Database research and the development of learned query optimisers rely heavily on realistic SQL workloads. Acquiring real-world queries is increasingly difficult, however, due to strict privacy regulations, and publicly released anonymised…

Databases · Computer Science 2026-04-10 Kahan Mehta , Amit Mankodi

Did you try out the new Bing Search? Or maybe you fiddled around with Google AI~Overviews? These might sound familiar because the modern-day search stack has recently evolved to include retrieval-augmented generation (RAG) systems. They…

Information Retrieval · Computer Science 2024-06-25 Ronak Pradeep , Nandan Thakur , Sahel Sharifymoghaddam , Eric Zhang , Ryan Nguyen , Daniel Campos , Nick Craswell , Jimmy Lin

Retrieval-augmented generation (RAG) has shown promising potential in knowledge intensive question answering (QA). However, existing approaches only consider the query itself, neither specifying the retrieval preferences for the retrievers…

Information Retrieval · Computer Science 2025-02-18 Zhongwu Chen , Chengjin Xu , Dingmin Wang , Zhen Huang , Yong Dou , Xuhui Jiang , Jian Guo

The Web of Linked Data is composed of tons of RDF documents interlinked to each other forming a huge repository of distributed semantic data. Effectively querying this distributed data source is an important open problem in the Semantic Web…

Databases · Computer Science 2015-07-21 Olaf Hartig , Jorge Pérez

Real-world tables often exhibit irregular schemas, heterogeneous value formats, and implicit relational structure, which degrade the reliability of downstream table reasoning and question answering. Most existing approaches address these…

Computation and Language · Computer Science 2026-02-24 Gaurav Najpande , Tampu Ravi Kumar , Manan Roy Choudhury , Neha Valeti , Yanjie Fu , Vivek Gupta

Academic question answering (QA) in heterogeneous scholarly networks presents unique challenges requiring both structural understanding and interpretable reasoning. While graph neural networks (GNNs) capture structured graph information and…

Social and Information Networks · Computer Science 2026-01-30 Runsong Jia , Mengjia Wu , Ying Ding , Jie Lu , Yi Zhang

The Shapes Constraint Language (SHACL) was standardized by the World Wide Web as a constraint language to describe and validate RDF data graphs. SHACL uses the notion of shapes graph to describe a set of shape constraints paired with…

Computational Complexity · Computer Science 2024-08-01 Shqiponja Ahmetaj , Timo Camillo Merkl , Reinhard Pichler

Enhancing the reasoning capabilities of Large Language Models remains a critical challenge in artificial intelligence. We introduce RDoLT, Recursive Decomposition of Logical Thought prompting, a novel framework that significantly boosts LLM…

Computation and Language · Computer Science 2025-01-07 Kaleem Ullah Qasim , Jiashu Zhang , Tariq Alsahfi , Ateeq Ur Rehman Butt

The ability to efficiently find relevant subgraphs and paths in a large graph to a given query is important in many applications including scientific data analysis, social networks, and business intelligence. Currently, there is little…

Retrieval-Augmented Generation (RAG) enhances the factuality of Large Language Models (LLMs) by incorporating retrieved documents and/or generated context. However, LLMs often exhibit a stylistic bias when presented with mixed contexts,…

Computation and Language · Computer Science 2026-04-21 Jiaang Li , Zhendong Mao , Quan Wang , Yuning Wan , Yongdong Zhang

The management of versioned knowledge graphs presents significant challenges, particularly in querying data across multiple versions efficiently. This paper introduces QuaQue, a key component of the ConVer-G system, which addresses this…

Databases · Computer Science 2026-03-20 Jey Puget Gil , Emmanuel Coquery , John Samuel , Gilles Gesquière

We describe a generic framework for representing and reasoning with annotated Semantic Web data, a task becoming more important with the recent increased amount of inconsistent and non-reliable meta-data on the web. We formalise the…

Databases · Computer Science 2011-03-08 Antoine Zimmermann , Nuno Lopes , Axel Polleres , Umberto Straccia