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Related papers: SMECS: A Software Metadata Extraction and Curation…

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The reuse of research software is central to research efficiency and academic exchange. The application of software enables researchers with varied backgrounds to reproduce, validate, and expand upon study findings. Furthermore, the…

To satisfy the principles of FAIR software, software sustainability and software citation, research software must be formally published. Publication repositories make this possible and provide published software versions with unique and…

Software Engineering · Computer Science 2022-01-25 Stephan Druskat , Oliver Bertuch , Guido Juckeland , Oliver Knodel , Tobias Schlauch

Research software is an important output of research and must be published according to the FAIR Principles for Research Software. This can be achieved by publishing software with metadata under a persistent identifier. HERMES is a tool…

Software Engineering · Computer Science 2025-03-12 Sophie Kernchen , Michael Meinel , Stephan Druskat , Michael Fritzsche , David Pape , Oliver Bertuch

Metadata of scientific articles such as title, abstract, keywords or index terms, body text, conclusion, reference and others play a decisive role in collecting, managing and storing academic data in scientific databases, academic journals…

Information Retrieval · Computer Science 2018-07-25 Jahongir Azimjonov , Jumabek Alikhanov

Computational engineering generates knowledge through the analysis and interpretation of research data, which is produced by computer simulation. Supercomputers produce huge amounts of research data. To address a research question, a lot of…

Information Retrieval · Computer Science 2020-07-15 Björn Schembera , Dorothea Iglezakis

Within the past few decades we have witnessed digital revolution, which moved scholarly communication to electronic media and also resulted in a substantial increase in its volume. Nowadays keeping track with the latest scientific…

Digital Libraries · Computer Science 2017-10-30 Dominika Tkaczyk

Metadata extraction is essential for cataloging and preserving datasets, enabling effective research discovery and reproducibility, especially given the current exponential growth in scientific research. While Masader (Alyafeai et al.,2021)…

Computation and Language · Computer Science 2025-09-19 Zaid Alyafeai , Maged S. Al-Shaibani , Bernard Ghanem

It is challenging to determine whether datasets are findable, accessible, interoperable, and reusable (FAIR) because the FAIR Guiding Principles refer to highly idiosyncratic criteria regarding the metadata used to annotate datasets.…

Digital Libraries · Computer Science 2022-10-17 Mark A. Musen , Martin J. O'Connor , Erik Schultes , Marcos Martinez-Romero , Josef Hardi , John Graybeal

A plethora of scientific software packages are published in repositories, e.g., Zenodo and figshare. These software packages are crucial for the reproducibility of published research. As an additional route to scholarly knowledge graph…

Digital Libraries · Computer Science 2022-12-16 Muhammad Haris , Markus Stocker , Sören Auer

Knowledge about software used in scientific investigations is important for several reasons, for instance, to enable an understanding of provenance and methods involved in data handling. However, software is usually not formally cited, but…

Information Retrieval · Computer Science 2021-08-23 David Schindler , Felix Bensmann , Stefan Dietze , Frank Krüger

Modern workflows run on increasingly heterogeneous computing architectures and with this heterogeneity comes additional complexity. We aim to apply the FAIR principles for research reproducibility by developing software to collect metadata…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-06-19 Polina Shpilker , Line Pouchard

According to the FAIR (findability, accessibility, interoperability, and reusability) principles, scientific data should always be stored with machine-readable descriptive metadata. Existing solutions to store data with metadata, such as…

Databases · Computer Science 2024-09-12 Albert K. Engstfeld , Johannes M. Hermann , Nicolas G. Hörmann , Julian Rüth

In computational science and in computer science, research software is a central asset for research. Computational science is the application of computer science and software engineering principles to solving scientific problems, whereas…

Software Engineering · Computer Science 2019-08-19 Wilhelm Hasselbring , Leslie Carr , Simon Hettrick , Heather Packer , Thanassis Tiropanis

Metadata plays a critical role in indexing, documenting, and analyzing scientific literature, yet extracting it accurately and efficiently remains a challenging task. Traditional approaches often rely on rule-based or task-specific models,…

Computation and Language · Computer Science 2025-10-09 Zaid Alyafeai , Maged S. Al-Shaibani , Bernard Ghanem

In this article, we present the challenge of software citation as a method to ensure credit for and identification, discovery, and reuse of software in scientific and engineering research. We discuss related work and key challenges/research…

Computers and Society · Computer Science 2016-11-04 Kyle E. Niemeyer , Arfon M. Smith , Daniel S. Katz

Deriving reliable conclusions and insights from environmental observational data urgently requires the enrichment with consistent and comprehensive metadata, including time-resolved context such as changing deployments, configurations, and…

In the ever-changing realm of research software development, it is crucial for the scientific community to grasp current trends to identify gaps that can potentially hinder scientific progress. The adherence to the FAIR (Findable,…

Software Engineering · Computer Science 2025-10-08 Eva Martín del Pico , Josep Lluís Gelpí , Salvador Capella-Gutiérrez

Domain-specific metadata schemas are essential to improve the findability and reusability of research software and to follow the FAIR4RS principles. However, many domains, including energy research, lack established metadata schemas. To…

Software Engineering · Computer Science 2026-01-15 Stephan Ferenz , Oliver Werth , Astrid Nieße

Reproducible computational research (RCR) is the keystone of the scientific method for in silico analyses, packaging the transformation of raw data to published results. In addition to its role in research integrity, RCR has the capacity to…

Digital Libraries · Computer Science 2021-04-20 Jeremy Leipzig , Daniel Nüst , Charles Tapley Hoyt , Stian Soiland-Reyes , Karthik Ram , Jane Greenberg
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