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Whole-brain parcellation from MRI is a critical yet challenging task due to the complexity of subdividing the brain into numerous small, irregular shaped regions. Traditionally, template-registration methods were used, but recent advances…

Computer Vision and Pattern Recognition · Computer Science 2026-01-15 Yucheng Li , Xiaofan Wang , Junyi Wang , Yijie Li , Xi Zhu , Mubai Du , Dian Sheng , Wei Zhang , Fan Zhang

Medical image segmentation is crucial for clinical diagnosis. The Segmentation Anything Model (SAM) serves as a powerful foundation model for visual segmentation and can be adapted for medical image segmentation. However, medical imaging…

Image and Video Processing · Electrical Eng. & Systems 2024-11-07 Yuxi Liu , Guibo Luo , Yuesheng Zhu

In the era of information explosion, efficiently leveraging large-scale unlabeled data while minimizing the reliance on high-quality pixel-level annotations remains a critical challenge in the field of medical imaging. Semi-supervised…

Computer Vision and Pattern Recognition · Computer Science 2025-06-11 Hongjie Zhu , Xiwei Liu , Rundong Xue , Zeyu Zhang , Yong Xu , Daji Ergu , Ying Cai , Yang Zhao

The Segment Anything Model (SAM) has demonstrated exceptional performance and versatility, making it a promising tool for various related tasks. In this report, we explore the application of SAM in Weakly-Supervised Semantic Segmentation…

Computer Vision and Pattern Recognition · Computer Science 2023-06-21 Weixuan Sun , Zheyuan Liu , Yanhao Zhang , Yiran Zhong , Nick Barnes

Tumor lesion segmentation on CT or MRI images plays a critical role in cancer diagnosis and treatment planning. Considering the inherent differences in tumor lesion segmentation data across various medical imaging modalities and equipment,…

Image and Video Processing · Electrical Eng. & Systems 2024-07-12 Hairong Shi , Songhao Han , Shaofei Huang , Yue Liao , Guanbin Li , Xiangxing Kong , Hua Zhu , Xiaomu Wang , Si Liu

Semantic segmentation is fundamental to vision systems requiring pixel-level scene understanding, yet deploying it on resource-constrained devices demands efficient architectures. Although existing methods achieve real-time inference…

Computer Vision and Pattern Recognition · Computer Science 2025-08-13 Shi-Chen Zhang , Yunheng Li , Yu-Huan Wu , Qibin Hou , Ming-Ming Cheng

The Segment Anything Model (SAM), developed by Meta AI Research, represents a significant breakthrough in computer vision, offering a robust framework for image and video segmentation. This survey provides a comprehensive exploration of the…

Latent variable models such as the Variational Auto-Encoder (VAE) have become a go-to tool for analyzing biological data, especially in the field of single-cell genomics. One remaining challenge is the interpretability of latent variables…

Genomics · Quantitative Biology 2023-02-20 Romain Lopez , Nataša Tagasovska , Stephen Ra , Kyunghyn Cho , Jonathan K. Pritchard , Aviv Regev

Most image segmentation algorithms are trained on binary masks formulated as a classification task per pixel. However, in applications such as medical imaging, this "black-and-white" approach is too constraining because the contrast between…

Image and Video Processing · Electrical Eng. & Systems 2020-11-19 Charley Gros , Andreanne Lemay , Julien Cohen-Adad

Medical ultrasound image segmentation presents a formidable challenge in the realm of computer vision. Traditional approaches rely on Convolutional Neural Networks (CNNs) and Transformer-based methods to address the intricacies of medical…

Computer Vision and Pattern Recognition · Computer Science 2025-08-20 Weixin Xu , Ziliang Wang

The Segment Anything Model (SAM) represents a significant breakthrough into foundation models for computer vision, providing a large-scale image segmentation model. However, despite SAM's zero-shot performance, its segmentation masks lack…

Computer Vision and Pattern Recognition · Computer Science 2025-03-26 Xianjie Liu , Keren Fu , Yao Jiang , Qijun Zhao

Nucleus segmentation is an important analysis task in digital pathology. However, methods for automatic segmentation often struggle with new data from a different distribution, requiring users to manually annotate nuclei and retrain…

Image and Video Processing · Electrical Eng. & Systems 2025-06-03 Titus Griebel , Anwai Archit , Constantin Pape

Medical image segmentation is a critical task in computer-aided diagnosis and treatment planning. However, deep learning models often struggle to generalize across datasets due to domain shifts arising from variations in imaging protocols,…

Computer Vision and Pattern Recognition · Computer Science 2026-05-12 Phuoc-Nguyen Bui , Van-Nguyen Pham , Duc-Tai Le , Junghyun Bum , Hyunseung Choo

Segment Anything Model (SAM) has recently achieved amazing results in the field of natural image segmentation. However, it is not effective for medical image segmentation, owing to the large domain gap between natural and medical images. In…

Image and Video Processing · Electrical Eng. & Systems 2024-04-24 Zhengzheng Tu , Le Gu , Xixi Wang , Bo Jiang

Semantic segmentation of electron microscopy (EM) images of biological samples remains a challenge in the life sciences. EM data captures details of biological structures, sometimes with such complexity that even human observers can find it…

Computer Vision and Pattern Recognition · Computer Science 2025-11-03 Sheida Rahnamai Kordasiabi , Damian Dalle Nogare , Florian Jug

The Segment Anything Model (SAM) demonstrates impressive zero-shot segmentation ability on natural images but encounters difficulties in medical imaging due to domain shifts, anatomical variability, and its reliance on user-provided…

Computer Vision and Pattern Recognition · Computer Science 2025-09-24 Yingzhen Hu , Yiheng Zhong , Ruobing Li , Yingxue Su , Jiabao An , Feilong Tang , Jionglong Su , Imran Razzak

This paper presents the Autonomous Driving Segment Anything Model (AD-SAM), a fine-tuned vision foundation model for semantic segmentation in autonomous driving (AD). AD-SAM extends the Segment Anything Model (SAM) with a dual-encoder and…

Computer Vision and Pattern Recognition · Computer Science 2025-11-03 Mario Camarena , Het Patel , Fatemeh Nazari , Evangelos Papalexakis , Mohamadhossein Noruzoliaee , Jia Chen

Medical image segmentation is a key task in the imaging workflow, influencing many image-based decisions. Traditional, fully-supervised segmentation models rely on large amounts of labeled training data, typically obtained through manual…

Image and Video Processing · Electrical Eng. & Systems 2025-11-04 Tyler Ward , Meredith K. Owen , O'Kira Coleman , Brian Noehren , Abdullah-Al-Zubaer Imran

Image-level weakly supervised semantic segmentation is a challenging problem that has been deeply studied in recent years. Most of advanced solutions exploit class activation map (CAM). However, CAMs can hardly serve as the object mask due…

Computer Vision and Pattern Recognition · Computer Science 2020-04-10 Yude Wang , Jie Zhang , Meina Kan , Shiguang Shan , Xilin Chen

Recently, Meta AI Research approaches a general, promptable Segment Anything Model (SAM) pre-trained on an unprecedentedly large segmentation dataset (SA-1B). Without a doubt, the emergence of SAM will yield significant benefits for a wide…

Computer Vision and Pattern Recognition · Computer Science 2024-08-23 Wei Ji , Jingjing Li , Qi Bi , Tingwei Liu , Wenbo Li , Li Cheng