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Related papers: Code Clone Detection via an AlphaFold-Inspired Fra…

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AI-based protein structure prediction pipelines, such as AlphaFold2, have achieved near-experimental accuracy. These advanced pipelines mainly rely on Multiple Sequence Alignments (MSAs) as inputs to learn the co-evolution information from…

Biomolecules · Quantitative Biology 2023-10-19 Xiaomin Fang , Fan Wang , Lihang Liu , Jingzhou He , Dayong Lin , Yingfei Xiang , Xiaonan Zhang , Hua Wu , Hui Li , Le Song

Code cloning is a common practice in software development, but it poses significant security risks by propagating vulnerabilities across cloned segments. To address this challenge, we introduce srcVul, a scalable, precise detection approach…

Software Engineering · Computer Science 2025-05-06 Hakam Alomari , Christopher Vendome , Hilal Gyawali

Transformer networks such as CodeBERT already achieve outstanding results for code clone detection in benchmark datasets, so one could assume that this task has already been solved. However, code clone detection is not a trivial task.…

Software Engineering · Computer Science 2022-09-02 Tim Sonnekalb , Bernd Gruner , Clemens-Alexander Brust , Patrick Mäder

Semantic code search is the task of retrieving relevant code snippet given a natural language query. Different from typical information retrieval tasks, code search requires to bridge the semantic gap between the programming language and…

Computation and Language · Computer Science 2022-01-28 Chen Wu , Ming Yan

AlphaFold can be used for both single-chain and multi-chain protein structure prediction, while the latter becomes extremely challenging as the number of chains increases. In this work, by taking each chain as a node and assembly actions as…

Computational Engineering, Finance, and Science · Computer Science 2024-05-08 Ziqi Gao , Tao Feng , Jiaxuan You , Chenyi Zi , Yan Zhou , Chen Zhang , Jia Li

Code search is a widely used technique by developers during software development. It provides semantically similar implementations from a large code corpus to developers based on their queries. Existing techniques leverage deep learning…

Software Engineering · Computer Science 2022-02-17 Weisong Sun , Chunrong Fang , Yuchen Chen , Guanhong Tao , Tingxu Han , Quanjun Zhang

The issue of clone code has persisted in software engineering, primarily because developers often copy and paste code segments. This common practice has elevated the importance of clone code detection, garnering attention from both software…

Software Engineering · Computer Science 2025-05-12 QiHong Chen , Lianghao Jiang , Iftekhar Ahmed

Semantic clones are program components with similar behavior, but different textual representation. Semantic similarity is hard to detect, and semantic clone detection is still an open issue. We present semantic clone detection via…

Software Engineering · Computer Science 2020-01-22 Hannes Thaller , Lukas Linsbauer , Alexander Egyed

Large language models (LLMs) have been massively applied to many tasks, often surpassing state-of-the-art approaches. While their effectiveness in code generation has been extensively studied (e.g., AlphaCode), their potential for code…

Software Engineering · Computer Science 2023-07-21 Pablo Antonio Martínez , Gregorio Bernabé , José Manuel García

Program similarity is a fundamental concept, central to the solution of software engineering tasks such as software plagiarism, clone identification, code refactoring and code search. Accurate similarity estimation between programs requires…

Machine Learning · Computer Science 2020-07-31 Aravind Nair , Avijit Roy , Karl Meinke

Program semantics learning is the core and fundamental for various code intelligent tasks e.g., vulnerability detection, clone detection. A considerable amount of existing works propose diverse approaches to learn the program semantics for…

Software Engineering · Computer Science 2022-03-23 Jing Kai Siow , Shangqing Liu , Xiaofei Xie , Guozhu Meng , Yang Liu

AlphaFold2 (AF2) has transformed protein structure prediction by harnessing co-evolutionary constraints embedded in multiple sequence alignments (MSAs). MSAs not only encode static structural information, but also hold critical details…

Biomolecules · Quantitative Biology 2025-03-04 Enming Xing , Junjie Zhang , Shen Wang , Xiaolin Cheng

Developers introduce code clones to improve programming productivity. Many existing studies have achieved impressive performance in monolingual code clone detection. However, during software development, more and more developers write…

Software Engineering · Computer Science 2023-09-08 Jia Li , Chongyang Tao , Zhi Jin , Fang Liu , Jia Li , Ge Li

The lexical and syntactic disparities among different programming languages (e.g., Java and Python) pose significant challenges for multi-language software engineering tasks such as cross-language code clone detection and code retrieval,…

Software Engineering · Computer Science 2026-05-11 Junhao Chen , Jingxuan Zhang , Jian He , Yixuan Tang , Weiqin Zou

Source code plagiarism is a long-standing issue in tertiary computer science education. Many source code plagiarism detection tools have been proposed to aid in the detection of source code plagiarism. However, existing detection tools are…

Software Engineering · Computer Science 2021-04-23 Hayden Cheers , Yuqing Lin , Shamus P. Smith

In recent years, code security has become increasingly important, especially with the rise of interconnected technologies. Detecting vulnerabilities early in the software development process has demonstrated numerous benefits. Consequently,…

Software Engineering · Computer Science 2024-07-22 José Gonçalves , Tiago Dias , Eva Maia , Isabel Praça

Deep Learning applications are becoming increasingly popular. Developers of deep learning systems strive to write more efficient code. Deep learning systems are constantly evolving, imposing tighter development timelines and increasing…

Software Engineering · Computer Science 2021-07-30 Hadhemi Jebnoun , Md Saidur Rahman , Foutse Khomh , Biruk Asmare Muse

Machine programming (MP) is concerned with automating software development. According to studies, software engineers spend upwards of 50% of their development time debugging software. To help accelerate debugging, we present MP-CodeCheck…

Software Engineering · Computer Science 2022-04-18 Urs C. Muff , Celine Lee , Paul Gottschlich , Justin Gottschlich

Duplicated code or code clones are a kind of code smell that have both positive and negative impacts on the development and maintenance of software systems. Software clone research in the past mostly focused on the detection and analysis of…

Software Engineering · Computer Science 2020-05-05 Chanchal K. Roy , Minhaz F. Zibran , Rainer Koschke

Duplicated code has a negative impact on the quality of software systems and should be detected at least. In this paper, we discuss an approach that improves source code retrieval using the structural information about the programs. We…

Software Engineering · Computer Science 2013-08-19 Yoshihisa Udagawa