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A vast amount of medical knowledge is available for public use through online health forums, and question-answering platforms on social media. The majority of the population in the United States doesn't have the right amount of health…

Computation and Language · Computer Science 2025-01-28 Haritha Gangavarapu , Giridhar Kaushik Ramachandran , Kevin Lybarger , Meliha Yetisgen , Özlem Uzuner

This report is the system description of the MaLei team (Manchester and Leiden) for the shared task Plain Language Adaptation of Biomedical Abstracts (PLABA) 2024 (we had an earlier name BeeManc following last year), affiliated with…

Computation and Language · Computer Science 2025-02-18 Zhidong Ling , Zihao Li , Pablo Romero , Lifeng Han , Goran Nenadic

Biomedical literature often uses complex language and inaccessible professional terminologies. That is why simplification plays an important role in improving public health literacy. Applying Natural Language Processing (NLP) models to…

Computation and Language · Computer Science 2024-03-19 Zihao Li , Samuel Belkadi , Nicolo Micheletti , Lifeng Han , Matthew Shardlow , Goran Nenadic

In this system report, we describe the models and methods we used for our participation in the PLABA2023 task on biomedical abstract simplification, part of the TAC 2023 tracks. The system outputs we submitted come from the following three…

Computation and Language · Computer Science 2024-10-23 Zihao Li , Samuel Belkadi , Nicolo Micheletti , Lifeng Han , Matthew Shardlow , Goran Nenadic

Automatic simplification can help laypeople to comprehend complex scientific text. Language models are frequently applied to this task by translating from complex to simple language. In this paper, we describe our system based on Llama 2,…

Computation and Language · Computer Science 2023-12-07 Valentin Knappich , Simon Razniewski , Annemarie Friedrich

As Large Language Models (LLMs) are increasingly integrated into healthcare to address complex inquiries, ensuring their reliability remains a critical challenge. Recent studies have highlighted that generic LLMs often struggle in clinical…

Computation and Language · Computer Science 2026-04-01 Bian Sun , Zhenjian Wang , Orvill de la Torre , Zirui Wang

This paper describes our submissions to the TREC 2024 PLABA track with the aim to simplify biomedical abstracts for a K8-level audience (13-14 years old students). We tested three approaches using OpenAI's gpt-4o and gpt-4o-mini models:…

Computation and Language · Computer Science 2025-02-21 Primoz Kocbek , Leon Kopitar , Zhihong Zhang , Emirhan Aydin , Maxim Topaz , Gregor Stiglic

Recent advances in large language models (LLMs) have made significant progress across multiple biomedical tasks, including biomedical question answering, lay-language summarization of the biomedical literature, and clinical note…

Information Retrieval · Computer Science 2026-03-24 Deepak Gupta , Dina Demner-Fushman , William Hersh , Steven Bedrick , Kirk Roberts

Building agents capable of understanding language instructions is critical to effective and robust human-AI collaboration. Recent work focuses on training these agents via reinforcement learning in environments with synthetic language;…

Computation and Language · Computer Science 2021-11-02 Suvir Mirchandani , Siddharth Karamcheti , Dorsa Sadigh

The application of large language models to provide relevance assessments presents exciting opportunities to advance information retrieval, natural language processing, and beyond, but to date many unknowns remain. This paper reports on the…

Information Retrieval · Computer Science 2024-11-14 Shivani Upadhyay , Ronak Pradeep , Nandan Thakur , Daniel Campos , Nick Craswell , Ian Soboroff , Hoa Trang Dang , Jimmy Lin

Reasoning about actions and change (RAC) is essential to understand and interact with the ever-changing environment. Previous AI research has shown the importance of fundamental and indispensable knowledge of actions, i.e., preconditions…

Computation and Language · Computer Science 2022-11-28 Weinan He , Canming Huang , Zhanhao Xiao , Yongmei Liu

With the advancement of large language models (LLMs), the biomedical domain has seen significant progress and improvement in multiple tasks such as biomedical question answering, lay language summarization of the biomedical literature,…

Information Retrieval · Computer Science 2024-12-17 Deepak Gupta , Dina Demner-Fushman , William Hersh , Steven Bedrick , Kirk Roberts

The goal of text simplification (TS) is to transform difficult text into a version that is easier to understand and more broadly accessible to a wide variety of readers. In some domains, such as healthcare, fully automated approaches cannot…

Computation and Language · Computer Science 2020-10-22 Hoang Van , David Kauchak , Gondy Leroy

Analyzing vast textual data and summarizing key information from electronic health records imposes a substantial burden on how clinicians allocate their time. Although large language models (LLMs) have shown promise in natural language…

Cognitive task analysis (CTA) is a type of analysis in applied psychology aimed at eliciting and representing the knowledge and thought processes of domain experts. In CTA, often heavy human labor is involved to parse the interview…

Computation and Language · Computer Science 2019-06-28 Junyi Du , He Jiang , Jiaming Shen , Xiang Ren

Pathology reports serve as the definitive record for breast cancer staging, yet their unstructured format impedes large-scale data curation. While Large Language Models (LLMs) offer semantic reasoning, their deployment is often limited by…

Machine Learning · Computer Science 2026-04-16 Jiahao Shao , Anam Nawaz Khan , Christopher Brett , Tom Berg , Xueping Li , Bing Yao

The exponential increase in scientific literature and online information necessitates efficient methods for extracting knowledge from textual data. Natural language processing (NLP) plays a crucial role in addressing this challenge,…

Computation and Language · Computer Science 2025-10-22 Zhyar Rzgar K. Rostam , Gábor Kertész

Though exponentially growing health-related literature has been made available to a broad audience online, the language of scientific articles can be difficult for the general public to understand. Therefore, adapting this expert-level…

Computation and Language · Computer Science 2022-10-25 Kush Attal , Brian Ondov , Dina Demner-Fushman

Large Language Models (LLMs) have improved substantially alignment, yet their behavior remains highly sensitive to prompt phrasing. This brittleness has motivated automated prompt engineering, but most existing methods (i) require a…

Computation and Language · Computer Science 2026-03-05 Bartosz Dziuba , Kacper Kuchta , Paweł Batorski , Przemysław Spurek , Paul Swoboda

BACKGROUND: Recent studies have shown that domain-adapted large language models (LLMs) do not consistently outperform general-purpose counterparts on standard medical benchmarks, raising questions about the need for specialized clinical…

Computation and Language · Computer Science 2026-04-09 Ane G. Domingo-Aldama , Iker De La Iglesia , Maitane Urruela , Aitziber Atutxa , Ander Barrena
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