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Related papers: ChemLog: Making MSOL Viable for Ontological Classi…

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In this study, we introduced a new benchmark consisting of a curated dataset and a defined evaluation process to assess the compositional reasoning capabilities of large language models within the chemistry domain. We designed and validated…

Computation and Language · Computer Science 2025-08-07 Mohammad Khodadad , Ali Shiraee Kasmaee , Mahdi Astaraki , Nicholas Sherck , Hamidreza Mahyar , Soheila Samiee

Generating vector representations (embeddings) of OWL ontologies is a growing task due to its applications in predicting missing facts and knowledge-enhanced learning in fields such as bioinformatics. The underlying semantics of OWL…

Logic in Computer Science · Computer Science 2024-11-07 Fernando Zhapa-Camacho , Robert Hoehndorf

Enterprise-scale knowledge management faces significant challenges in integrating multi-source heterogeneous data and enabling effective semantic reasoning. Traditional knowledge graphs often struggle with implicit relationship discovery…

Computation and Language · Computer Science 2026-02-03 Yao Zhang , Hongyin Zhu

Even if binary relations and orders are a common formalization topic, we need to formalize specific orders (namely monomial and graded) in the process of formalizing in Rocq the finite element method. This article is therefore definitions,…

Logic in Computer Science · Computer Science 2025-12-05 Sylvie Boldo , François Clément , Vincent Martin , Micaela Mayero

Ontology alignment, a critical process in the Semantic Web for detecting relationships between different ontologies, has traditionally focused on identifying so-called "simple" 1-to-1 relationships through class labels and properties…

Artificial Intelligence · Computer Science 2024-07-24 Reihaneh Amini , Sanaz Saki Norouzi , Pascal Hitzler , Reza Amini

Within the model-theoretic framework for supervised learning introduced by Grohe and Tur\'an (TOCS 2004), we study the parameterized complexity of learning concepts definable in monadic second-order logic (MSO). We show that the problem of…

Logic in Computer Science · Computer Science 2025-01-20 Steffen van Bergerem , Martin Grohe , Nina Runde

The World Wide Web Consortium (W3C) has published several recommendations for building and storing ontologies, including the most recent OWL 2 Web Ontology Language (OWL). These initiatives have been followed by practical implementations…

Artificial Intelligence · Computer Science 2019-10-24 Yingbing Hua , Björn Hein

The Semantic Web effort has steadily been gaining traction in the recent years. In particular,Web search companies are recently realizing that their products need to evolve towards having richer semantic search capabilities. Description…

Artificial Intelligence · Computer Science 2012-10-19 Thomas Lukasiewicz , Maria Vanina Martinez , Giorgio Orsi , Gerardo I. Simari

User preference integration is of great importance in multi-objective optimization, in particular in many objective optimization. Preferences have long been considered in traditional multicriteria decision making (MCDM) which is based on…

Neural and Evolutionary Computing · Computer Science 2017-03-13 Longmei Li , Iryna Yevseyeva , Vitor Basto-Fernandes , Heike Trautmann , Ning Jing , Michael Emmerich

Self-evolving scientific agents capable of conquering the hard tail of formal mathematics require Compositional Learning Behaviours (CLBs) -- the capacity to ground and recombine novel symbolic structures in context, beyond mere…

Computation and Language · Computer Science 2026-05-28 Kevin Yandoka Denamganaï

Motivation: Multi-omics integration can improve cancer subtyping, but modality informativeness and noise vary across cancer types and patients. Existing graph-based methods optimize modality weights jointly with the classification objective…

Machine Learning · Computer Science 2026-04-28 Boyang Fan , Hengchuang Yin , Siyu Yi , Yifan Wang , Zhicheng Li , Leijiyu Zhou , Jiancheng Lv , Wei Ju

Large Language Models (LLMs), despite their success in question answering, exhibit limitations in complex multi-hop question answering (MQA) tasks that necessitate non-linear, structured reasoning. This limitation stems from their inability…

Computation and Language · Computer Science 2025-09-25 Haonan Bian , Yutao Qi , Rui Yang , Yuanxi Che , Jiaqian Wang , Heming Xia , Ranran Zhen

Open-vocabulary object detection (OVD) aims to recognize and localize object categories beyond the training set. Recent approaches leverage vision-language models to generate pseudo-labels using image-text alignment, allowing detectors to…

Computer Vision and Pattern Recognition · Computer Science 2026-03-19 Hojun Choi , Youngsun Lim , Jaeyo Shin , Hyunjung Shim

The recent surge in Multimodal Large Language Models (MLLMs) has showcased their remarkable potential for achieving generalized intelligence by integrating visual understanding into Large Language Models.Nevertheless, the sheer model size…

Computation and Language · Computer Science 2024-07-30 Shilin Xu , Xiangtai Li , Haobo Yuan , Lu Qi , Yunhai Tong , Ming-Hsuan Yang

Chemical language models (CLMs) are increasingly used for molecular design and property prediction. Because these models learn from textual encodings of molecules, differences in how such encodings are generated may affect their behavior.…

Quantitative Methods · Quantitative Biology 2026-02-13 Yosuke Kikuchi , Yasuhiro Yoshikai , Shumpei Nemoto , Ayako Furuhama , Takashi Yamada , Hiroyuki Kusuhara , Tadahaya Mizuno

In ontology-mediated querying, description logic (DL) ontologies are used to enrich incomplete data with domain knowledge which results in more complete answers to queries. However, the evaluation of ontology-mediated queries (OMQs) over…

Databases · Computer Science 2020-07-30 Pablo Barcelo , Cristina Feier , Carsten Lutz , Andreas Pieris

Capability ontologies are increasingly used to model functionalities of systems or machines. The creation of such ontological models with all properties and constraints of capabilities is very complex and can only be done by ontology…

Artificial Intelligence · Computer Science 2024-10-21 Luis Miguel Vieira da Silva , Aljosha Köcher , Felix Gehlhoff , Alexander Fay

OWL (Web Ontology Language) ontologies, which are able to represent both relational and type facts as standard knowledge graphs and complex domain knowledge in Description Logic (DL) axioms, are widely adopted in domains such as healthcare…

Artificial Intelligence · Computer Science 2025-02-05 Hui Yang , Jiaoyan Chen , Uli Sattler

The previously introduced Modular Ontology Modeling methodology (MOMo) attempts to mimic the human analogical process by using modular patterns to assemble more complex concepts. To support this, MOMo organizes organizes ontology design…

Artificial Intelligence · Computer Science 2024-03-01 Andrew Eells , Brandon Dave , Pascal Hitzler , Cogan Shimizu

Let S be a commutative semiring. M. Droste and P. Gastin have introduced in 2005 weighted monadic second order logic WMSOL with weights in S. They use a syntactic fragment RMSOL of WMSOL to characterize word functions (power series)…

Logic in Computer Science · Computer Science 2013-07-18 Nadia Labai , Johann A. Makowsky