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Retrieving homologous protein sequences is essential for a broad range of protein modeling tasks such as fitness prediction, protein design, structure modeling, and protein-protein interactions. Traditional workflows have relied on a…

Quantitative Methods · Quantitative Biology 2025-06-11 Ruben Weitzman , Peter Mørch Groth , Lood Van Niekerk , Aoi Otani , Yarin Gal , Debora Marks , Pascal Notin

Intelligent analysis of medical imaging plays a crucial role in assisting clinical diagnosis. However, achieving efficient and high-accuracy image classification in resource-constrained computational environments remains challenging. This…

Computer Vision and Pattern Recognition · Computer Science 2025-08-18 Jingsong Xia , Yue Yin , Xiuhan Li

Diffusion models represent a powerful family of generative models widely used for image and video generation. However, the time-consuming deployment, long inference time, and requirements on large memory hinder their applications on…

Machine Learning · Computer Science 2025-04-18 Kafeng Wang , Jianfei Chen , He Li , Zhenpeng Mi , Jun Zhu

The field of computational pathology has witnessed great advancements since deep neural networks have been widely applied. These networks usually require large numbers of annotated data to train vast parameters. However, it takes…

Computer Vision and Pattern Recognition · Computer Science 2022-08-11 Yixiao Zhang , Adam Kortylewski , Qing Liu , Seyoun Park , Benjamin Green , Elizabeth Engle , Guillermo Almodovar , Ryan Walk , Sigfredo Soto-Diaz , Janis Taube , Alex Szalay , Alan Yuille

Recent advances have been made in applying convolutional neural networks to achieve more precise prediction results for medical image segmentation problems. However, the success of existing methods has highly relied on huge computational…

Image and Video Processing · Electrical Eng. & Systems 2021-08-24 Dian Qin , Jiajun Bu , Zhe Liu , Xin Shen , Sheng Zhou , Jingjun Gu , Zhijua Wang , Lei Wu , Huifen Dai

It is well known that many open-released foundational diffusion models have difficulty in generating images that substantially depart from average brightness, despite such images being present in the training data. This is due to an…

Computer Vision and Pattern Recognition · Computer Science 2023-11-28 Minghui Hu , Jianbin Zheng , Chuanxia Zheng , Chaoyue Wang , Dacheng Tao , Tat-Jen Cham

Diffusion Models (DMs) have demonstrated state-of-the-art performance in content generation without requiring adversarial training. These models are trained using a two-step process. First, a forward - diffusion - process gradually adds…

Computer Vision and Pattern Recognition · Computer Science 2024-03-13 Anwaar Ulhaq , Naveed Akhtar

This paper presents a comprehensive evaluation of lightweight deep learning models for image classification, emphasizing their suitability for deployment in resource-constrained environments such as low-memory devices. Five state-of-the-art…

Computer Vision and Pattern Recognition · Computer Science 2025-09-10 Tasnim Shahriar

Breast cancer is a leading cause of cancer-related mortality among women worldwide, with mammography as the primary screening tool. While deep learning models have shown strong performance in lesion segmentation, most rely on…

Computer Vision and Pattern Recognition · Computer Science 2026-05-07 Helder Oliveira

The Mixture of Experts (MoE) architecture has emerged as a powerful paradigm for scaling large language models (LLMs) while maintaining inference efficiency. However, their enormous memory requirements make them prohibitively expensive to…

Machine Learning · Computer Science 2025-06-24 Zichong Li , Chen Liang , Zixuan Zhang , Ilgee Hong , Young Jin Kim , Weizhu Chen , Tuo Zhao

Deep neural networks (DNNs) have heavily relied on traditional computational units like CPUs and GPUs. However, this conventional approach brings significant computational burdens, latency issues, and high power consumption, limiting their…

Computer Vision and Pattern Recognition · Computer Science 2024-05-29 Quan Liu , Brandon T. Swartz , Ivan Kravchenko , Jason G. Valentine , Yuankai Huo

With a view to statistical inference for discretely observed diffusion models, we propose simple methods of simulating diffusion bridges, approximately and exactly. Diffusion bridge simulation plays a fundamental role in likelihood and…

Statistics Theory · Mathematics 2014-03-10 Mogens Bladt , Michael Sørensen

Text-to-image (T2I) diffusion models lack an efficient mechanism for early quality assessment, leading to costly trial-and-error in multi-generation scenarios such as prompt iteration, agent-based generation, and flow-grpo. We reveal a…

Computer Vision and Pattern Recognition · Computer Science 2026-03-27 Benlei Cui , Bukun Huang , Zhizeng Ye , Xuemei Dong , Tuo Chen , Hui Xue , Dingkang Yang , Longtao Huang , Jingqun Tang , Haiwen Hong

SO(3) equivariant graph neural networks have become the dominant paradigm for atomistic foundation models, achieving high accuracy and data efficiency by building rotational symmetry directly into the architecture. Yet the computational…

Machine Learning · Computer Science 2026-05-12 Chen Wang , Siyu Hu , Guangming Tan , Weile Jia

In recent years, diffusion models have demonstrated remarkable success in high-fidelity image synthesis. However, fine-tuning these models for specialized domains, such as medical imaging, remains challenging due to limited domain-specific…

Computer Vision and Pattern Recognition · Computer Science 2025-10-28 Ruchir Namjoshi , Nagasai Thadishetty , Vignesh Kumar , Hemanth Venkateshwara

We present an ultra-efficient post-training method for shortcutting large-scale pre-trained flow matching diffusion models into efficient few-step samplers, enabled by novel velocity field self-distillation. While shortcutting in flow…

Computer Vision and Pattern Recognition · Computer Science 2025-10-22 Xu Cai , Yang Wu , Qianli Chen , Haoran Wu , Lichuan Xiang , Hongkai Wen

Once deployed, medical image analysis methods are often faced with unexpected image corruptions and noise perturbations. These unknown covariate shifts present significant challenges to deep learning based methods trained on "clean" images.…

Machine Learning · Computer Science 2025-07-01 Xing Shen , Hengguan Huang , Brennan Nichyporuk , Tal Arbel

Multimodal medical images play a crucial role in the precise and comprehensive clinical diagnosis. Diffusion model is a powerful strategy to synthesize the required medical images. However, existing approaches still suffer from the problem…

Computer Vision and Pattern Recognition · Computer Science 2025-05-28 Jiahua Xu , Dawei Zhou , Lei Hu , Zaiyi Liu , Nannan Wang , Xinbo Gao

To facilitate implementation of high-accuracy deep neural networks especially on resource-constrained devices, maintaining low computation requirements is crucial. Using very deep models for classification purposes not only decreases the…

Computer Vision and Pattern Recognition · Computer Science 2021-03-19 Mohammad Hosseini , Mahmudul Hasan

Protein structure prediction is pivotal for understanding the structure-function relationship of proteins, advancing biological research, and facilitating pharmaceutical development and experimental design. While deep learning methods and…

Machine Learning · Computer Science 2024-12-30 Kaihui Cheng , Ce Liu , Qingkun Su , Jun Wang , Liwei Zhang , Yining Tang , Yao Yao , Siyu Zhu , Yuan Qi