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Slender bodies capable of spontaneous motion in the absence of external actuation in an otherwise quiescent fluid are common in biological, physical and technological contexts. The interplay between the spontaneous fluid flow, Brownian…

Soft Condensed Matter · Physics 2015-08-13 Abhrajit Laskar , R. Adhikari

We study the elasto-plastic behaviour of materials made of individual (discrete) objects, such as a liquid foam made of bubbles. The evolution of positions and mutual arrangements of individual objects is taken into account through…

Soft Condensed Matter · Physics 2015-05-18 Christophe Raufaste , Simon Cox , Philippe Marmottant , François Graner

In this work, we compare the structural and dynamic behavior of active filaments in two dimensions using tangential and push-pull models, including a variant with passive end monomers. These models serve as valuable frameworks for…

We present in this fluid dynamics video a novel experimental setup with self-propelled swimmers on a free surface. The swimmers, modeled as flexible thin filaments, are subjected to external electromagnetic forcing driving a propagating…

Fluid Dynamics · Physics 2014-11-04 Sophie Ramananarivo , Benjamin Thiria , Ramiro Godoy-Diana

We model analytically the dynamics of a cytoskeletal filament in a motility assay. The filament is described as rigid rod free to slide in two dimensions. The motor proteins consist of polymeric tails tethered to the plane and modeled as…

Statistical Mechanics · Physics 2015-03-19 Shiladitya Banerjee , M. Cristina Marchetti , Kristian Müller-Nedebock

Dynamic organization of the cytoskeletal filaments and rod-like proteins in the cell membrane and other biological interfaces occurs in many cellular processes. Previous modeling studies have considered the dynamics of a single rod on fluid…

Fluid Dynamics · Physics 2022-06-17 Wenzheng Shi , Moslem Moradi , Ehssan Nazockdast

Active fluids comprise a variety of systems composed of elements immersed in a fluid environment which can convert some form of energy into directed motion; as such they are intrinsically out-of-equilibrium in the absence of any external…

Soft Condensed Matter · Physics 2019-06-26 Andrea Scagliarini , Ignacio Pagonabarraga

Active bodies in viscous fluids interact hydrodynamically through self-generated flows. Here we study spontaneous aggregation induced by hydrodynamic flow in a suspension of stiff, apolar, active filaments. Lateral hydrodynamic attractions…

Soft Condensed Matter · Physics 2015-08-20 Ankita Pandey , P. B. Sunil Kumar , R. Adhikari

The last few years have witnessed an explosion of new numerical methods for filament hydrodynamics. Aside from their ubiquity in biology, physics, and engineering, filaments present unique challenges from an applied-mathematical point of…

Numerical Analysis · Mathematics 2024-11-21 Ondrej Maxian , Aleksandar Donev

As a stiff polymer tumbles in shear flow, it experiences compressive viscous forces that can cause it to buckle and undergo a sequence of morphological transitions with increasing flow strength. We use numerical simulations to uncover the…

Fluid Dynamics · Physics 2021-06-16 Brato Chakrabarti , Yanan Liu , Olivia du Roure , Anke Lindner , David Saintillan

Biofilament-motor protein complexes are ubiquitous in biology and drive the transport of cargo vital for many fundamental cellular processes. As they move, motor proteins exert compressive forces on the filaments to which they are attached,…

Biological Physics · Physics 2024-06-12 Bethany Clarke , Yongyun Hwang , Eric Keaveny

We provide a minimal model for an active nematic film in contact with both a solid substrate and a passive isotropic fluid, and explore its dynamics in one and two dimensions using a combination of hybrid Lattice Boltzmann simulations and…

Soft Condensed Matter · Physics 2017-02-16 Matthew L. Blow , Marco Aqil , Benno Liebchen , Davide Marenduzzo

The three-dimensional dynamics of a single non-Brownian flexible fiber in shear flow is evaluated numerically, in the absence of inertia. A wide range of ratios A of bending to hydrodynamic forces and hundreds of initial configurations are…

Soft Condensed Matter · Physics 2020-02-12 A. M. Slowicka , H. A. Stone , M. L. Ekiel-Jezewska

We investigate by exact optimization method properties of two- and three-dimensional systems of elastic lines in presence of splayed columnar disorder. The ground state of many lines is separable both in 2d and 3d leading to a random walk…

Superconductivity · Physics 2007-05-23 Viljo Petaja , Matti Sarjala , Mikko Alava , Heiko Rieger

We discuss a two-dimensional model for the dynamics of axonemal deformations driven by internally generated forces of molecular motors. Our model consists of an elastic filament pair connected by active elements. We derive the dynamic…

Biological Physics · Physics 2009-11-06 Sebastien Camalet , Frank Julicher

We characterize the dynamical behavior of a clamped flexible fiber immersed in wall turbulence over a wide range of natural frequencies by means of direct numerical simulations. Only two flapping states are possible: one where the fiber…

Fluid Dynamics · Physics 2024-05-15 Giulio Foggi Rota , Morie Koseki , Riya Agrawal , Stefano Olivieri , Marco Edoardo Rosti

We present 3D hydrodynamic adiabatic simulations of a shock interacting with a dense, elongated cloud. We compare how the nature of the interaction changes with the filament's length and its orientation to the shock, and with the shock Mach…

Astrophysics of Galaxies · Physics 2016-02-24 J. M. Pittard , K. J. A. Goldsmith

The effect of flexibility on the hydrodynamic loads and on the flow structures generated on a rectangular foil when oscillating in pitch has been studied. Hydrodynamic loads were measured with a 6-axes balance, and the flow structures were…

Fluid Dynamics · Physics 2013-10-15 R. Fernandez-Prats , F. J. Huera-Huarte

The recent discovery of electro-active polymers has shown great promises in the field of soft robotics, and was logically followed by experimental, numerical and theoretical developments. Most of these studies were concerned with systems…

Soft Condensed Matter · Physics 2020-12-07 Hadrien Bense , Benoît Roman , Bruno Andreotti

We describe a method, based on techniques used in molecular dynamics, for simulating the inertialess dynamics of an elastic filament immersed in a fluid. The model is used to study the "one-armed swimmer". That is, a flexible appendage…

Biological Physics · Physics 2007-05-23 M. Cosentino Lagomarsino , F. Capuani , C. P. Lowe