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Large language models (LLMs) such as ChatGPT, Gemini, LlaMa, and Claude are trained on massive quantities of text parsed from the internet and have shown a remarkable ability to respond to complex prompts in a manner often indistinguishable…

Optics · Physics 2025-04-01 Darui Lu , Yang Deng , Jordan M. Malof , Willie J. Padilla

Large Language Models (LLMs) exhibit strong general reasoning but struggle in molecular science due to the lack of explicit chemical priors in standard string representations. Current solutions face a fundamental dilemma. Training-based…

Computation and Language · Computer Science 2025-12-23 Mingxu Zhang , Dazhong Shen , Qi Zhang , Ying Sun

Recent advances in large language models (LLMs) have demonstrated transformative potential across diverse fields. While LLMs have been applied to molecular simplified molecular input line entry system (SMILES) in computer-aided synthesis…

Machine Learning · Computer Science 2026-01-07 Kenan Li , Yijian Zhang , Jin Wang , Haipeng Gan , Zeying Sun , Xiaoguang Lei , Hao Dong

Retrosynthesis -- the process of identifying a set of reactants to synthesize a target molecule -- is of vital importance to material design and drug discovery. Existing machine learning approaches based on language models and graph neural…

Chemical Physics · Physics 2021-12-10 Ruoxi Sun , Hanjun Dai , Li Li , Steven Kearnes , Bo Dai

Retrosynthetic planning is a fundamental problem in chemistry for finding a pathway of reactions to synthesize a target molecule. Recently, search algorithms have shown promising results for solving this problem by using deep neural…

Machine Learning · Computer Science 2021-06-10 Junsu Kim , Sungsoo Ahn , Hankook Lee , Jinwoo Shin

Large language models (LLMs), including both proprietary and open-source models, have showcased remarkable capabilities in addressing a wide range of downstream tasks. Nonetheless, when it comes to practical Chinese legal tasks, these…

Computation and Language · Computer Science 2024-06-10 Zhi Zhou , Jiang-Xin Shi , Peng-Xiao Song , Xiao-Wen Yang , Yi-Xuan Jin , Lan-Zhe Guo , Yu-Feng Li

This research full paper presents an enhancement pipeline for large language models (LLMs) in assessing homework for an undergraduate circuit analysis course, aiming to improve LLMs' capacity to provide personalized support to electrical…

Computers and Society · Computer Science 2025-11-25 Liangliang Chen , Huiru Xie , Zhihao Qin , Yiming Guo , Jacqueline Rohde , Ying Zhang

Virtual screening plays a critical role in modern drug discovery by enabling the identification of promising candidate molecules for experimental validation. Traditional machine learning methods such, as Support Vector Machines (SVM) and…

Machine Learning · Computer Science 2025-04-29 Radia Berreziga , Mohammed Brahimi , Khairedine Kraim , Hamid Azzoune

General-purpose embedding models have demonstrated strong performance in text retrieval but remain suboptimal for table retrieval, where highly structured content leads to semantic compression and query-table mismatch. Recent LLM-based…

Information Retrieval · Computer Science 2026-01-23 Tsung-Hsiang Chou , Chen-Jui Yu , Shui-Hsiang Hsu , Yao-Chung Fan

In the field of chemistry, the objective is to create novel molecules with desired properties, facilitating accurate property predictions for applications such as material design and drug screening. However, existing graph deep learning…

Machine Learning · Computer Science 2024-08-28 Sakhinana Sagar Srinivas , Venkataramana Runkana

Accurate molecular property prediction is a critical challenge with wide-ranging applications in chemistry, materials science, and drug discovery. Molecular representation methods, including fingerprints and graph neural networks (GNNs),…

Machine Learning · Computer Science 2025-08-13 Jiaxin Ju , Yizhen Zheng , Huan Yee Koh , Can Wang , Shirui Pan

Recent progress has expanded the use of large language models (LLMs) in drug discovery, including synthesis planning. However, objective evaluation of retrosynthesis performance remains limited. Existing benchmarks and metrics typically…

With the rapid development of artificial intelligence (AI), large language models (LLMs) such as GPT-4 have garnered significant attention in the scientific community, demonstrating great potential in advancing scientific discovery. This…

Machine Learning · Computer Science 2024-07-15 Yingming Pu , Liping Huang , Tao Lin , Hongyu Chen

Pre-trained large language models(LLMs) have attracted increasing attention in biomedical domains due to their success in natural language processing. However, the complex traits and heterogeneity of multi-sources genomics data pose…

Computation and Language · Computer Science 2025-11-25 Yanjun Lyu , Zihao Wu , Lu Zhang , Jing Zhang , Yiwei Li , Wei Ruan , Zhengliang Liu , Zeyu Zhang , Xiang Li , Rongjie Liu , Chao Huang , Wentao Li , Tianming Liu , Dajiang Zhu

The rapid expansion of English technical terminology presents a significant challenge to traditional expert-based standardization, particularly in rapidly developing areas such as artificial intelligence and quantum computing. Manual…

Computation and Language · Computer Science 2025-06-12 Li Weigang , Pedro Carvalho Brom

Large Language Models (LLMs) employ three popular training approaches: Masked Language Models (MLM), Causal Language Models (CLM), and Sequence-to-Sequence Models (seq2seq). However, each approach has its strengths and limitations, and…

Machine Learning · Computer Science 2025-02-18 Xuefeng Liu , Songhao Jiang , Bo Li , Rick Stevens

Retrosynthesis planning enables the discovery of viable synthetic routes for target molecules, playing a crucial role in domains like drug discovery and materials design. Multi-step retrosynthetic planning remains computationally…

Artificial Intelligence · Computer Science 2025-09-29 Xiaozhuang Song , Xuanhao Pan , Xinjian Zhao , Hangting Ye , Shufei Zhang , Jian Tang , Tianshu Yu

Chemical synthesis remains a critical bottleneck in the discovery and manufacture of functional small molecules. AI-based synthesis planning models could be a potential remedy to find effective syntheses, and have made progress in recent…

Applying LLMs to complex industrial processes remains challenging due to the semantic gap between natural language design intents and the rigorous physical logic of engineering. In the field of petroleum refining engineering, a critical…

Computational Engineering, Finance, and Science · Computer Science 2026-05-20 Dongxiao Liu , Yuwen Ding , Xinghai Wei , Jiacheng Ji , Lei Li , Linghui Li , Xiaoyong Li