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Motivation: Second generation sequencing technology makes it feasible for many researches to obtain enough sequence reads to attempt the de novo assembly of higher eukaryotes (including mammals). De novo assembly not only provides a tool…

Genomics · Quantitative Biology 2010-08-17 Thomas C Conway , Andrew J Bromage

Hypergraphs model complex, non-binary relationships like co-authorships, social group memberships, and recommendations. Like traditional graphs, hypergraphs can grow large, posing challenges for storage, transmission, and query performance.…

Data Structures and Algorithms · Computer Science 2026-04-16 Enno Adler , Stefan Böttcher , Rita Hartel

Hypergraphs provide a natural representation for many-to-many relationships in data-intensive applications, yet their scalability is often hindered by high memory consumption. While prior work has improved computational efficiency, reducing…

Data Structures and Algorithms · Computer Science 2025-06-23 Tianyu Zhao , Dongfang Zhao , Luanzheng Guo , Nathan Tallent

In practical machine learning systems, graph based data representation has been widely used in various learning paradigms, ranging from unsupervised clustering to supervised classification. Besides those applications with natural graph or…

Machine Learning · Computer Science 2012-10-19 Jun Wang , Yinglong Xia

Research techniques in the last decade have improved lossless compression ratios by significantly increasing processing time. These techniques have remained obscure because production systems require high throughput and low resource…

Tensor network contraction is central to problems ranging from many-body physics to computer science. We describe how to approximate tensor network contraction through bond compression on arbitrary graphs. In particular, we introduce a…

Quantum Physics · Physics 2024-01-30 Johnnie Gray , Garnet Kin-Lic Chan

The range-minimum query (RMQ) problem is a fundamental data structuring task with numerous applications. Despite the fact that succinct solutions with worst-case optimal $2n+o(n)$ bits of space and constant query time are known, it has been…

Data Structures and Algorithms · Computer Science 2019-03-07 J. Ian Munro , Sebastian Wild

Tabular datasets are widely used in scientific disciplines such as biology. While these disciplines have already adopted AI methods to enhance their findings and analysis, they mainly use tree-based methods due to their interpretability. At…

Machine Learning · Computer Science 2025-04-16 Salvatore Raieli , Nathalie Jeanray , Stéphane Gerart , Sebastien Vachenc , Abdulrahman Altahhan

In this paper we define a family of preferential attachment models for random graphs with fitness in the following way: independently for each node, at each time step a random fitness is drawn according to the position of a moving average…

Probability · Mathematics 2019-12-02 Alessandra Cipriani , Andrea Fontanari

In real life, networks are dynamic in nature; they grow over time and often exhibit power-law degree sequences. To model the evolving structure of the internet, Barab\'{a}si and Albert introduced a simple dynamic model with a power-law…

Probability · Mathematics 2024-11-22 Rounak Ray

In this paper we propose and study a new complexity model for approximation algorithms. The main motivation are practical problems over large data sets that need to be solved many times for different scenarios, e.g., many multicast trees…

Data Structures and Algorithms · Computer Science 2010-06-18 Marek Cygan , Lukasz Kowalik , Marcin Mucha , Marcin Pilipczuk , Piotr Sankowski

We perform experimental studies on data structures that answer path median, path counting, and path reporting queries in weighted trees. These query problems generalize the well-known range median query problem in arrays, as well as the…

Data Structures and Algorithms · Computer Science 2020-04-21 Meng He , Serikzhan Kazi

The existence of considerable amount of redundancy in the Internet traffic at the packet level has stimulated the deployment of packet-level redundancy elimination techniques within the network by enabling network nodes to memorize data…

Networking and Internet Architecture · Computer Science 2014-11-25 Ahmad Beirami , Mohsen Sardari , Faramarz Fekri

Tables are widely used in documents because of their compact and structured representation of information. In particular, in scientific papers, tables can sum up novel discoveries and summarize experimental results, making the research…

Computer Vision and Pattern Recognition · Computer Science 2023-02-21 Davide del Bimbo , Andrea Gemelli , Simone Marinai

Dynamic or temporal networks enable representation of time-varying edges between nodes. Conventional adjacency-based data structures used for storing networks such as adjacency lists were designed without incorporating time and can thus…

Social and Information Networks · Computer Science 2022-06-24 Tanner Hilsabeck , Makan Arastuie , Kevin S. Xu

The spatial preferred attachment (SPA) model is a model for networked information spaces such as domains of the World Wide Web, citation graphs, and on-line social networks. It uses a metric space to model the hidden attributes of the…

Social and Information Networks · Computer Science 2012-10-17 Jeannette Janssen , Pawel Pralat , Rory Wilson

Electronic data is growing at increasing rates, in both size and connectivity: the increasing presence of, and interest in, relationships between data. An example is the Twitter social network graph. Due to this growth demand is increasing…

Databases · Computer Science 2013-01-23 Alex Averbuch , Martin Neumann

Distributed computing has become a common practice nowadays, where the recent focus has been given to the usage of smart networking devices with in-network computing capabilities. State-of-the-art switches with near-line rate computing and…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-01-13 Raz Segal , Chen Avin , Gabriel Scalosub

Can we use machine learning to compress graph data? The absence of ordering in graphs poses a significant challenge to conventional compression algorithms, limiting their attainable gains as well as their ability to discover relevant…

Machine Learning · Computer Science 2023-09-26 Giorgos Bouritsas , Andreas Loukas , Nikolaos Karalias , Michael M. Bronstein

It has been shown in the indexing literature that there is an essential difference between prefix/range searches on the one hand, and predecessor/rank searches on the other hand, in that the former provably allows faster query resolution.…

Data Structures and Algorithms · Computer Science 2018-04-16 Djamal Belazzougui , Paolo Boldi , Rasmus Pagh , Sebastiano Vigna
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