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Extensive research shows that more species-rich assemblages are generally more productive and efficient in resource use than comparable assemblages with fewer species. But the question of how diversity simultaneously affects the wide…

The twin crises of climate change and biodiversity loss define a strong need for functional diversity monitoring. While the availability of high-quality ecological monitoring data is increasing, the quantification of functional diversity so…

Populations and Evolution · Quantitative Biology 2023-01-11 Alexey Ryabov , Bernd Blasius , Helmut Hillebrand , Irina Olenina , Thilo Gross

Entropy measures of probability distributions are widely used measures in ecology, biology, genetics, and in other fields, to quantify species diversity of a community. Unfortunately, entropy-based diversity indices, or diversity indices…

Populations and Evolution · Quantitative Biology 2014-08-14 Karim T. Abou-Moustafa

Resolving the relationship between biodiversity and ecosystem functioning has been one of the central goals of modern ecology. Early debates about the relationship were finally resolved with the advent of a statistical partitioning scheme…

Populations and Evolution · Quantitative Biology 2019-07-12 Pradeep Pillai , Tarik C. Gouhier

It is generally accepted that "diversity" is associated with success in evolutionary algorithms. However, diversity is a broad concept that can be measured and defined in a multitude of ways. To date, most evolutionary computation research…

Neural and Evolutionary Computing · Computer Science 2023-01-18 Jose Guadalupe Hernandez , Alexander Lalejini , Emily Dolson

Nestedness is a property of interaction networks widely observed in natural mutualistic communities. Despite a widespread interest on this pattern, no general consensus exists on how to measure it. Instead, several metrics aiming at…

Physics and Society · Physics 2020-02-04 Claudia Payrato-Borras , Laura Hernandez , Yamir Moreno

Despite the critical role of functional diversity (FD) in understanding ecological systems and processes, its robust quantification remains a significant challenge. A long-held view in the field is that it is not possible to capture its…

Populations and Evolution · Quantitative Biology 2025-09-22 Adji Bousso Dieng , Amey Pasarkar

Any method's development and practical application is limited by our ability to measure its reliability. The popularity of generative modeling emphasizes the importance of good synthetic data metrics. Unfortunately, previous works have…

Machine Learning · Computer Science 2025-05-29 Ossi Räisä , Boris van Breugel , Mihaela van der Schaar

The long-term sustainability of research software is a critical challenge, as it usually suffers from poor maintainability, lack of adaptability, and eventual obsolescence. This paper proposes a novel approach to addressing this issue by…

Software Engineering · Computer Science 2025-09-15 Philipp Zech , Irdin Pekaric

This paper addresses the problem of quantifying diversity for a set of objects. First, we conduct a systematic review of existing diversity measures and explore their undesirable behavior in certain cases. Based on this review, we formulate…

Machine Learning · Computer Science 2025-06-17 Mikhail Mironov , Liudmila Prokhorenkova

Numerous genotypic diversity measures (GDMs) are available in the literature to assess the convergence status of an evolutionary algorithm (EA) or describe its search behavior. In a recent study, the authors of this paper drew attention to…

Neural and Evolutionary Computing · Computer Science 2015-07-02 Guillaume Corriveau , Raynald Guilbault , Antoine Tahan , Robert Sabourin

Diversity indices are useful single-number metrics for characterizing a complex distribution of a set of attributes across a population of interest. The utility of these different metrics or sets of metrics depend on the context and…

Populations and Evolution · Quantitative Biology 2020-03-06 Song Xu , Lucas Böttcher , Tom Chou

Diversity measurement underpins the study of biological systems, but measures used vary across disciplines. Despite their common use and broad utility, no unified framework has emerged for measuring, comparing and partitioning diversity.…

Quantitative Methods · Quantitative Biology 2016-12-09 Richard Reeve , Tom Leinster , Christina A. Cobbold , Jill Thompson , Neil Brummitt , Sonia N. Mitchell , Louise Matthews

Entropy, under a variety of names, has long been used as a measure of diversity in ecology, as well as in genetics, economics and other fields. There is a spectrum of viewpoints on diversity, indexed by a real parameter q giving greater or…

Information Theory · Computer Science 2017-09-05 Tom Leinster , Mark W. Meckes

In this work, we briefly introduce and discuss some of the diversity measures used in Ecology. After a succinct description and analysis of the most relevant ones, we single out the Shannon-Weiner index. We justify why it is the most…

Cryptography and Security · Computer Science 2013-10-15 Julio Hernandez-Castro , Jeremy Rossman

1. Animal movement patterns contribute to our understanding of variation in breeding success and survival of individuals, and the implications for population dynamics. 2. Over time, sensor technology for measuring movement patterns has…

Quantitative Methods · Quantitative Biology 2018-01-11 Leah R. Johnson , Philipp H. Boersch-Supan , Richard A. Phillips , Sadie J. Ryan

The unprecedented size of the human population, along with its associated economic activities, have an ever increasing impact on global environments. Across the world, countries are concerned about the growing resource consumption and the…

Microbial ecosystems exhibit a surprising amount of functionally relevant diversity at all levels of taxonomic resolution, presenting a significant challenge for most modeling frameworks. A long-standing hope of theoretical ecology is that…

Populations and Evolution · Quantitative Biology 2025-10-09 Jacob Moran , Lucas C. Graham , Mikhail Tikhonov

Synchronized behavior among individuals is a ubiquitous feature of populations. Understanding mechanisms of (de)synchronization demands meaningful, interpretable, computable quantifications of synchrony, relevant to measurements that can be…

Populations and Evolution · Quantitative Biology 2024-06-25 Francis C. Motta , Kevin McGoff , Breschine Cummins , Steven B. Haase

This is a preliminary article stating and proving a new maximum entropy theorem. The entropies that we consider can be used as measures of biodiversity. In that context, the question is: for a given collection of species, which frequency…

Information Theory · Computer Science 2011-01-14 Tom Leinster
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