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Evolutionary algorithms have been successfully applied to a variety of optimisation problems in stationary environments. However, many real world optimisation problems are set in dynamic environments where the success criteria shifts…

Neural and Evolutionary Computing · Computer Science 2016-10-11 Matthew Hughes

We perform a full similarity analysis of an idealized ecosystem using Buckingham's $\Pi$ theorem to obtain dimensionless similarity parameters given that some (non- unique) method exists that can differentiate different functional groups of…

Biological Physics · Physics 2013-05-10 S. C. Chapman , N. W. Watkins , G. Rowlands , A. Clarke , E. J. Murphy

One essential ingredient of evolutionary theory is the concept of fitness as a measure for a species' success in its living conditions. Here, we quantify the effect of environmental fluctuations onto fitness by analytical calculations on a…

Populations and Evolution · Quantitative Biology 2015-05-19 Anna Melbinger , Massimo Vergassola

The Maximum Entropy Theory of Ecology (METE) is a unified theory of biodiversity that predicts a large number of macroecological patterns using only information on the species richness, total abundance, and total metabolic rate of the…

Populations and Evolution · Quantitative Biology 2015-01-23 Xiao Xiao , Daniel J. McGlinn , Ethan P. White

Africa is experiencing extensive biodiversity loss due to rapid changes in the environment, where natural resources constitute the main instrument for socioeconomic development and a mainstay source of livelihoods for an increasing…

The system decomposition theory has recently been developed for the dynamic analysis of nonlinear compartmental systems. The application of this theory to the ecosystem analysis has also been introduced in a separate article. Based on this…

Systems and Control · Computer Science 2020-11-24 Huseyin Coskun

Many biological systems perform close to their physical limits, but promoting this optimality to a general principle seems to require implausibly fine tuning of parameters. Using examples from a wide range of systems, we show that this…

Dormancy is an essential strategy for microorganisms to cope with environmental stress. However, global ecosystem models typically ignore microbial dormancy, resulting in major model uncertainties. To facilitate the consideration of…

Quantitative Methods · Quantitative Biology 2014-02-20 Gangsheng Wang , Melanie A. Mayes , Lianhong Gu , Christopher W. Schadt

Modeling environmental ecosystems is essential for effective resource management, sustainable development, and understanding complex ecological processes. However, traditional methods frequently struggle with the inherent complexity,…

Machine Learning · Computer Science 2025-03-06 Runlong Yu , Shengyu Chen , Yiqun Xie , Xiaowei Jia

In this paper entropy based methods are compared and used to measure structural diversity of an ensemble of 21 classifiers. This measure is mostly applied in ecology, whereby species counts are used as a measure of diversity. The measures…

Machine Learning · Computer Science 2008-10-21 L. Masisi , V. Nelwamondo , T. Marwala

Predicting species persistence within ecological communities is a fundamental challenge for both empirical and theoretical ecology. Existing methods span from mechanistic models, whose parameters are difficult to estimate from data, to…

Populations and Evolution · Quantitative Biology 2026-04-30 Davide Bernardi , Giorgio Nicoletti , Prajwal Padmanabha , Samir Suweis , Sandro Azaele , Simon A. Levin , Andrea Rinaldo , Amos Maritan

At present, there is a great deal of confusion regarding complexity and its measures (reviews on complexity measures are found in, e.g. Lloyd, 2001 and Shalizi, 2006 and more references therein). Moreover, there is also confusion regarding…

Biological Physics · Physics 2012-05-01 Attila Grandpierre

Much of our understanding of ecological and evolutionary mechanisms derives from analysis of low-dimensional models: with few interacting species, or few axes defining "fitness". It is not always clear to what extent the intuition derived…

Populations and Evolution · Quantitative Biology 2018-02-14 Mikhail Tikhonov , Remi Monasson

This paper presents a comprehensive review of loss functions and performance metrics in deep learning, highlighting key developments and practical insights across diverse application areas. We begin by outlining fundamental considerations…

Expressive evaluation metrics are indispensable for informative experiments in all areas, and while several metrics are established in some areas, in others, such as feature selection, only indirect or otherwise limited evaluation metrics…

Machine Learning · Computer Science 2025-01-17 Muhammad Rajabinasab , Anton D. Lautrup , Tobias Hyrup , Arthur Zimek

We develop a theoretical framework to understand the persistence and coexistence of competitive species in a spatially explicit metacommunity model with a heterogeneous dispersal kernel. Our analysis, based on methods from the physics of…

Populations and Evolution · Quantitative Biology 2025-03-14 Davide Bernardi , Giorgio Nicoletti , Prajwal Padmanabha , Samir Suweis , Sandro Azaele , Andrea Rinaldo , Amos Maritan

Like it or not, attempts to evaluate and monitor the quality of academic research have become increasingly prevalent worldwide. Performance reviews range from at the level of individuals, through research groups and departments, to entire…

Physics and Society · Physics 2017-03-31 R. Kenna , O. Mryglod , B. Berche

Test functions are important to validate and compare the performance of optimization algorithms. There have been many test or benchmark functions reported in the literature; however, there is no standard list or set of benchmark functions.…

Artificial Intelligence · Computer Science 2013-08-20 Momin Jamil , Xin-She Yang

Biodiversity loss is a critical planetary boundary, yet its connection to computing remains largely unexamined. Prior sustainability efforts in computing have focused on carbon and water, overlooking biodiversity due to the lack of…

Computers and Society · Computer Science 2025-07-01 Tianyao Shi , Ritbik Kumar , Inez Hua , Yi Ding

There has been a surge of recent interest in sociocultural diversity in machine learning (ML) research, with researchers (i) examining the benefits of diversity as an organizational solution for alleviating problems with algorithmic bias,…

Computers and Society · Computer Science 2021-07-21 Sina Fazelpour , Maria De-Arteaga