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The evolution of particulate and multiphase systems can transition from dynamic regimes, governed by classical transport equations with well-defined damping coefficients, to anomalously slow relaxation described by rate equations when the…

Soft Condensed Matter · Physics 2025-08-20 Carlos E. Colosqui

When continued device scaling reaches the ultimate limit imposed by atoms, technology based on atomically precise structures is expected to emerge. Device fabrication will then require building blocks with identified atomic arrangements and…

Mesoscale and Nanoscale Physics · Physics 2021-05-27 K. Otsuka , N. Fang , D. Yamashita , T. Taniguchi , K. Watanabe , Y. K. Kato

We present a detailed description of biopolymer translocation through a nanopore in the presence of a solvent, using an innovative multi-scale methodology which treats the biopolymer at the microscopic scale as combined with a…

Computational Physics · Physics 2008-02-27 Massimo Bernaschi , Simone Melchionna , Sauro Succi , Maria Fyta , Efthimios Kaxiras

Nanoparticle surface structural dynamics is believed to play a significant role in regulating functionalities such as diffusion, reactivity, and catalysis but the atomic-level processes are not well understood. Atomic resolution…

Biological functions in each animal cell depend on coordinated operations of a wide variety of molecular motors. Some of the these motors transport cargo to their respective destinations whereas some others are mobile workshops which…

Biological Physics · Physics 2008-03-07 Debashish Chowdhury

We present an energy-stable scheme for numerically approximating the governing equations for incompressible two-phase flows with different densities and dynamic viscosities for the two fluids. The proposed scheme employs a scalar-valued…

Computational Physics · Physics 2019-06-26 Z. Yang , S. Dong

Thermally driven nanotube nanomotors provide linear mass transportation controlled by a temperature gradient. However, the underlying mechanism is still unclear where the mass transportation velocity in experiment is much lower than that…

Mesoscale and Nanoscale Physics · Physics 2014-08-01 Jige Chen , Yi Gao , Chunlei Wang , Renliang Zhang , Hong Zhao , Haiping Fang

Electrogenerated gas nanobubbles strongly influence the performance of electrochemical energy-conversion systems, yet their nucleation and early evolution remain poorly understood due to limitations of existing experimental and…

Soft Condensed Matter · Physics 2026-01-19 Nima Shakourifar , Nana Ofori-Opoku , Benzhong Zhao

Microscopic biological systems operate far from equilibrium, are subject to strong fluctuations, and are composed of many coupled components with interactions varying in nature and strength. Researchers are actively investigating the…

Statistical Mechanics · Physics 2023-12-25 Emma Lathouwers , David A. Sivak

DNA nanostructures are made using synthetic DNA strands, the sequences of which are designed such that they will self-assemble into the desired form by hybridization of complementary domains. Various structures and devices have been…

Biological Physics · Physics 2015-06-02 Katherine E. Dunn

A bio-heat transfer model for biological tissues in a micro-scale and periodical settings is investigated . It is assumed that the model is a two-component system consisting of solid particles representing tissue cells and interconnected…

Analysis of PDEs · Mathematics 2014-10-28 Abdelhamid Ainouz

We have developed an efficient and unconditionally energy-stable method for simulating droplet formation dynamics. Our approach involves a novel time-marching scheme based on the scalar auxiliary variable technique, specifically designed…

Numerical Analysis · Mathematics 2024-02-08 Jinpeng Zhang , Changjuan Zhang , Xiaoping Wang

Biological and engineered systems operate by coupling function to the transfer of heat and/or particles down a thermal or chemical gradient. In idealized \textit{deterministically} driven systems, thermodynamic control can be exerted…

Statistical Mechanics · Physics 2016-01-06 Benjamin B. Machta

This paper introduces the design of a demand response network control strategy aimed at thermostatically controlled electric heating and cooling systems in buildings. The method relies on the use of programmable communicating thermostats,…

Optimization and Control · Mathematics 2011-12-07 Simon Parkinson , Dan Wang , Curran Crawford , Ned Djilali

Evolving smart grids require flexible and adaptive control methods. A harmonized hybrid cyber-physical framework, which considers both physical and cyber layers and ensures adaptability, is one of the critical challenges to enable…

Machine Learning · Computer Science 2025-12-01 Muhammad Siddique , Sohaib Zafar

Molecular motors drive mechanical motions utilizing the free energy liberated from chemical reactions such as ATP hydrolysis. Although it is essential to know the efficiency of this free energy transduction, it has been a challenge due to…

Structure and function in nanoscale atomistic assemblies are tightly coupled, and every atom with its specific position and even every electron will have a decisive effect on the electronic structure, and hence, on the molecular properties.…

Chemical Physics · Physics 2024-02-21 Katja-Sophia Csizi , Markus Reiher

The combination of cytotoxic therapies and anti-angiogenic agents is emerging as a most promising strategy in the treatment of malignant tumors. However, the timing and sequencing of these treatments seem to play essential roles in…

Tissues and Organs · Quantitative Biology 2011-06-13 M. Kohandel , C. A. Haselwandter , M. Kardar , S. Sengupta , S. Sivaloganathan

Aluminum nanoparticles (ANPs) are among the most energy-dense solid fuels, yet the atomic mechanisms governing their transition from passivated particles to explosive reactants remain elusive. This stems from a fundamental computational…

Artificial Intelligence · Computer Science 2025-12-30 Yiming Lu , Tingyu Lu , Di Zhang , Lili Ye , Hao Li

The long debated protein dynamical transition was recently found also in non-biological macromolecules, such as poly-N-isopropylacrylamide (PNIPAM) microgels. Here, by using atomistic molecular dynamics simulations, we report a description…

Soft Condensed Matter · Physics 2019-03-14 Letizia Tavagnacco , Ester Chiessi , Marco Zanatta , Andrea Orecchini , Emanuela Zaccarelli