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Large language models (LLMs) show the promise in supporting scientific research implementation, yet their ability to generate correct and executable code remains limited. Existing works largely adopt one-shot settings, ignoring the…

A key challenge in artificial intelligence is the creation of systems capable of autonomously advancing scientific understanding by exploring novel domains, identifying complex patterns, and uncovering previously unseen connections in vast…

Artificial Intelligence · Computer Science 2024-09-10 Alireza Ghafarollahi , Markus J. Buehler

The proliferation of Large Language Models (LLMs) in recent years has realized many applications in various domains. Being trained with a huge of amount of data coming from various sources, LLMs can be deployed to solve different tasks,…

Software Engineering · Computer Science 2025-03-17 Duc S. H. Nguyen , Bach G. Truong , Phuong T. Nguyen , Juri Di Rocco , Davide Di Ruscio

In this paper we introduce ResearchCodeAgent, a novel multi-agent system leveraging large language models (LLMs) agents to automate the codification of research methodologies described in machine learning literature. The system bridges the…

Software Engineering · Computer Science 2025-05-06 Shubham Gandhi , Dhruv Shah , Manasi Patwardhan , Lovekesh Vig , Gautam Shroff

The accelerating growth of scientific publications has intensified the need for scalable, trustworthy systems to synthesize knowledge across diverse literature. While recent retrieval-augmented generation (RAG) methods have improved access…

Digital Libraries · Computer Science 2025-11-19 Hang Ding , Yilun Zhao , Tiansheng Hu , Manasi Patwardhan , Arman Cohan

Large language models (LLMs) have emerged as a widely-used tool for information seeking, but their generated outputs are prone to hallucination. In this work, our aim is to allow LLMs to generate text with citations, improving their factual…

Computation and Language · Computer Science 2023-11-01 Tianyu Gao , Howard Yen , Jiatong Yu , Danqi Chen

Large language models (LLMs) have created new opportunities to enhance the efficiency of scholarly activities; however, challenges persist in the ethical deployment of AI assistance, including (1) the trustworthiness of AI-generated…

Computation and Language · Computer Science 2026-02-27 Mengze Hong , Di Jiang , Chen Jason Zhang , Zichang Guo , Yawen Li , Jun Chen , Shaobo Cui , Zhiyang Su

We present SQuAI (https://squai.scads.ai/), a scalable and trustworthy multi-agent retrieval-augmented generation (RAG) framework for scientific question answering (QA) with large language models (LLMs). SQuAI addresses key limitations of…

Information Retrieval · Computer Science 2025-10-20 Ines Besrour , Jingbo He , Tobias Schreieder , Michael Färber

Deep research agents have emerged as powerful systems for addressing complex queries. Meanwhile, LLM-based retrievers have demonstrated strong capability in following instructions or reasoning. This raises a critical question: can LLM-based…

Information Retrieval · Computer Science 2026-02-09 Tiansheng Hu , Yilun Zhao , Canyu Zhang , Arman Cohan , Chen Zhao

Leveraging Multi-modal Large Language Models (MLLMs) to accelerate frontier scientific research is promising, yet how to rigorously evaluate such systems remains unclear. Existing benchmarks mainly focus on single-document understanding,…

Artificial Intelligence · Computer Science 2026-04-14 Lei Xiong , Huaying Yuan , Zheng Liu , Zhao Cao , Zhicheng Dou

Citations are the bedrock of scientific authority, yet their integrity is compromised by widespread miscitations: ranging from nuanced distortions to fabricated references. Systematic citation verification is currently unfeasible; manual…

Digital Libraries · Computer Science 2026-02-02 Peiran Li , Fangzhou Lin , Shuo Xing , Xiang Zheng , Xi Hong , Siyuan Yang , Jiashuo Sun , Zhengzhong Tu , Chaoqun Ni

Detecting cognitive biases in large language models (LLMs) is a fascinating task that aims to probe the existing cognitive biases within these models. Current methods for detecting cognitive biases in language models generally suffer from…

Computation and Language · Computer Science 2024-10-08 Zhentao Xie , Jiabao Zhao , Yilei Wang , Jinxin Shi , Yanhong Bai , Xingjiao Wu , Liang He

The rapid evolution of Retrieval-Augmented Generation (RAG) toward multimodal, high-stakes enterprise applications has outpaced the development of domain specific evaluation benchmarks. Existing datasets often rely on general-domain corpora…

Artificial Intelligence · Computer Science 2026-01-23 Chandan Kumar Sahu , Premith Kumar Chilukuri , Matthew Hetrich

Large language models (LLMs) serve as an active and promising field of generative artificial intelligence and have demonstrated abilities to perform complex tasks in multiple domains, including mathematical and scientific reasoning. In this…

Artificial Intelligence · Computer Science 2026-03-03 Ao Cheng , Lei Zhang , Guowei He

Frontier scientific reasoning is rapidly emerging as a key foundation for advancing AI agents in automated scientific discovery. Deep research agents offer a promising approach to this challenge. These models develop robust problem-solving…

Artificial Intelligence · Computer Science 2026-05-27 Tianshi Zheng , Rui Wang , Xiyun Li , Kelvin Kiu Wai Tam , Newt Nguyen Kim Hue Nam , Wei Fan , Yangqiu Song , Tianqing Fang

Academic survey writing, which distills vast literature into a coherent and insightful narrative, remains a labor-intensive and intellectually demanding task. While recent approaches, such as general DeepResearch agents and…

Computation and Language · Computer Science 2025-10-07 Zhaojun Sun , Xuzhou Zhu , Xuanhe Zhou , Xin Tong , Shuo Wang , Jie Fu , Guoliang Li , Zhiyuan Liu , Fan Wu

System Instructions (SIs), or system prompts, are pivotal for guiding Large Language Models (LLMs) but manual crafting is resource-intensive and often suboptimal. Existing automated methods frequently generate non-human-readable "soft…

Artificial Intelligence · Computer Science 2025-07-08 Jeshwanth Challagundla

As cosmological simulations and their associated software become increasingly complex, physicists face the challenge of searching through vast amounts of literature and user manuals to extract simulation parameters from dense academic…

Instrumentation and Methods for Astrophysics · Physics 2025-07-21 Xiaowen Zhang , Zhenyu Bi , Patrick Lachance , Xuan Wang , Tiziana Di Matteo , Rupert A. C. Croft

This paper presents DataSciBench, a comprehensive benchmark for evaluating Large Language Model (LLM) capabilities in data science. Recent related benchmarks have primarily focused on single tasks, easily obtainable ground truth, and…

Computation and Language · Computer Science 2025-02-20 Dan Zhang , Sining Zhoubian , Min Cai , Fengzu Li , Lekang Yang , Wei Wang , Tianjiao Dong , Ziniu Hu , Jie Tang , Yisong Yue

Large Language Models (LLMs) have shown promising potential in the medical domain, assisting with tasks like clinical note generation and patient communication. However, current LLMs are limited to text-based communication, hindering their…

Computation and Language · Computer Science 2025-06-17 Yusheng Liao , Shuyang Jiang , Yanfeng Wang , Yu Wang