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This paper presents our participation in the AGAC Track from the 2019 BioNLP Open Shared Tasks. We provide a solution for Task 3, which aims to extract "gene - function change - disease" triples, where "gene" and "disease" are mentions of…

Computation and Language · Computer Science 2019-09-30 Ashok Thillaisundaram , Theodosia Togia

Automated entity relation extraction (RE) from literature provides an important source for constructing biomedical database, which is more efficient and extensible than manual curation. However, existing RE models usually ignore the…

Computation and Language · Computer Science 2019-06-25 Lixiang Hong , JinJian Lin , Jiang Tao , Jianyang Zeng

Unsupervised Relation Extraction (RE) aims to identify relations between entities in text, without having access to labeled data during training. This setting is particularly relevant for domain specific RE where no annotated dataset is…

Computation and Language · Computer Science 2023-04-05 Pierre-Yves Genest , Pierre-Edouard Portier , Elöd Egyed-Zsigmond , Laurent-Walter Goix

The surging amount of biomedical literature & digital clinical records presents a growing need for text mining techniques that can not only identify but also semantically relate entities in unstructured data. In this paper we propose a text…

Computation and Language · Computer Science 2021-12-28 Hasham Ul Haq , Veysel Kocaman , David Talby

Relation Extraction (RE) is a fundamental task of information extraction, which has attracted a large amount of research attention. Previous studies focus on extracting the relations within a sentence or document, while currently…

Computation and Language · Computer Science 2022-11-01 Fengqi Wang , Fei Li , Hao Fei , Jingye Li , Shengqiong Wu , Fangfang Su , Wenxuan Shi , Donghong Ji , Bo Cai

Recent research efforts have explored the potential of leveraging natural language inference (NLI) techniques to enhance relation extraction (RE). In this vein, we introduce MetaEntailRE, a novel adaptation method that harnesses NLI…

Computation and Language · Computer Science 2025-03-10 William Hogan , Jingbo Shang

Relation extraction (RE) aims to identify relations between entities mentioned in texts. Although large language models (LLMs) have demonstrated impressive in-context learning (ICL) abilities in various tasks, they still suffer from poor…

Computation and Language · Computer Science 2024-04-30 Guozheng Li , Peng Wang , Wenjun Ke , Yikai Guo , Ke Ji , Ziyu Shang , Jiajun Liu , Zijie Xu

Relation Extraction (RE) aims at recognizing the relation between pairs of entities mentioned in a text. Advances in LLMs have had a tremendous impact on NLP. In this work, we propose a textual data augmentation framework called PGA for…

Computation and Language · Computer Science 2024-06-03 Yang Zhou , Shimin Shan , Hongkui Wei , Zhehuan Zhao , Wenshuo Feng

Document-level Relation Extraction (DocRE), which aims to extract relations from a long context, is a critical challenge in achieving fine-grained structural comprehension and generating interpretable document representations. Inspired by…

Computation and Language · Computer Science 2023-11-14 Junpeng Li , Zixia Jia , Zilong Zheng

This paper proposes a medical literature summary generation method based on the BERT model to address the challenges brought by the current explosion of medical information. By fine-tuning and optimizing the BERT model, we develop an…

Computation and Language · Computer Science 2024-10-29 Jiacheng Hu , Yiru Cang , Guiran Liu , Meiqi Wang , Weijie He , Runyuan Bao

Relation extraction (RE) is a standard information extraction task playing a major role in downstream applications such as knowledge discovery and question answering. Although decoder-only large language models are excelling in generative…

Computation and Language · Computer Science 2025-07-28 Yuhang Jiang , Ramakanth Kavuluru

Existing in-context learning (ICL) methods for relation extraction (RE) often prioritize language similarity over structural similarity, which can lead to overlooking entity relationships. To address this, we propose an AMR-enhanced…

Computation and Language · Computer Science 2025-04-28 Peitao Han , Lis Kanashiro Pereira , Fei Cheng , Wan Jou She , Eiji Aramaki

Contextual Relation Extraction (CRE) is mainly used for constructing a knowledge graph with a help of ontology. It performs various tasks such as semantic search, query answering, and textual entailment. Relation extraction identifies the…

Computation and Language · Computer Science 2023-09-14 R. Priyadharshini , G. Jeyakodi , P. Shanthi Bala

Fine-tuning pre-trained models have achieved impressive performance on standard natural language processing benchmarks. However, the resultant model generalizability remains poorly understood. We do not know, for example, how excellent…

Computation and Language · Computer Science 2023-01-26 Luoqiu Li , Xiang Chen , Hongbin Ye , Zhen Bi , Shumin Deng , Ningyu Zhang , Huajun Chen

Relation Extraction (RE) is a crucial task in Information Extraction, which entails predicting relationships between entities within a given sentence. However, extending pre-trained RE models to other languages is challenging, particularly…

Computation and Language · Computer Science 2023-04-21 Chiaming Hsu , Changtong Zan , Liang Ding , Longyue Wang , Xiaoting Wang , Weifeng Liu , Fu Lin , Wenbin Hu

We hypothesize that explicit integration of contextual information into an Multi-task Learning framework would emphasize the significance of context for boosting performance in jointly learning Named Entity Recognition (NER) and Relation…

Computation and Language · Computer Science 2021-02-23 Paul Barry , Sam Henry , Meliha Yetisgen , Bridget McInnes , Ozlem Uzuner

Generative relation extraction (RE) commonly involves first reformulating RE as a linguistic modeling problem easily tackled with pre-trained language models (PLM) and then fine-tuning a PLM with supervised cross-entropy loss. Although…

Computation and Language · Computer Science 2025-01-07 Jiaxin Duan , Fengyu Lu , Junfei Liu

Relation Extraction (RE) is a foundational task of natural language processing. RE seeks to transform raw, unstructured text into structured knowledge by identifying relational information between entity pairs found in text. RE has numerous…

Computation and Language · Computer Science 2022-07-19 William Hogan

Document-level relation extraction (RE) aims to extract the relations between entities from the input document that usually containing many difficultly-predicted entity pairs whose relations can only be predicted through relational…

Computation and Language · Computer Science 2022-11-29 Liang Zhang , Jinsong Su , Yidong Chen , Zhongjian Miao , Zijun Min , Qingguo Hu , Xiaodong Shi

Relation Extraction (RE) has attracted increasing attention, but current RE evaluation is limited to in-domain evaluation setups. Little is known on how well a RE system fares in challenging, but realistic out-of-distribution evaluation…

Computation and Language · Computer Science 2022-10-19 Elisa Bassignana , Barbara Plank