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Conventional processes for analyzing datasets and extracting meaningful information are often time-consuming and laborious. Previous work has identified manual, repetitive coding and data collection as major obstacles that hinder data…

Computation and Language · Computer Science 2024-04-02 Manit Mishra , Abderrahman Braham , Charles Marsom , Bryan Chung , Gavin Griffin , Dakshesh Sidnerlikar , Chatanya Sarin , Arjun Rajaram

Knowledge distillation, the technique of transferring knowledge from large, complex models to smaller ones, marks a pivotal step towards efficient AI deployment. Distilling Step-by-Step~(DSS), a novel method utilizing chain-of-thought~(CoT)…

Computation and Language · Computer Science 2024-06-11 Xin Chen , Hanxian Huang , Yanjun Gao , Yi Wang , Jishen Zhao , Ke Ding

Despite recent progress in Language Models (LMs) for software engineering, collecting training data remains a significant pain point. Existing datasets are small, with at most 1,000s of training instances from 11 or fewer GitHub…

Self-supervised representation learning (SSL) on biomedical networks provides new opportunities for drug discovery. However, how to effectively combine multiple SSL models is still challenging and has been rarely explored. Therefore, we…

Machine Learning · Computer Science 2022-12-20 Xiaoqi Wang , Yingjie Cheng , Yaning Yang , Yue Yu , Fei Li , Shaoliang Peng

Definitions are the foundation for any scientific work, but with a significant increase in publication numbers, gathering definitions relevant to any keyword has become challenging. We therefore introduce SciDef, an LLM-based pipeline for…

Information Retrieval · Computer Science 2026-02-06 Filip Kučera , Christoph Mandl , Isao Echizen , Radu Timofte , Timo Spinde

Autonomous Driving Systems (ADS) are safety-critical, where failures can be severe. While Metamorphic Testing (MT) is effective for fault detection in ADS, existing methods rely heavily on manual effort and lack automation. We present…

Software Engineering · Computer Science 2025-10-23 Linfeng Liang , Chenkai Tan , Yao Deng , Yingfeng Cai , T. Y Chen , Xi Zheng

Writing competitive programming problems is exacting. Authors must: set constraints, input distributions, and edge cases that rule out shortcuts; target specific algorithms (e.g., max-flow, dynamic programming, data structures); and…

Data science and engineering workflows often span multiple stages, from warehousing to orchestration, using tools like BigQuery, dbt, and Airbyte. As vision language models (VLMs) advance in multimodal understanding and code generation,…

Deep-research agents are capable of executing multi-step web exploration, targeted retrieval, and sophisticated question answering. Despite their powerful capabilities, deep-research agents face two critical bottlenecks: (1) the lack of…

Artificial Intelligence · Computer Science 2026-03-03 Tongzhou Wu , Yuhao Wang , Xinyu Ma , Xiuqiang He , Shuaiqiang Wang , Dawei Yin , Xiangyu Zhao

We present a multi-agent system for automation of scientific research tasks, cmbagent (https://github.com/CMBAgents/cmbagent). The system is formed by about 30 Large Language Model (LLM) agents and implements a Planning & Control strategy…

While large language models (LLMs) are rapidly advancing scientific research, they continue to struggle with core biological reasoning tasks essential for translational and biomedical discovery. To address this limitation, we created and…

Machine Learning · Computer Science 2025-08-26 Nathan Bigaud , Vincent Cabeli , Meltem Gürel , Arthur Pignet , John Klein , Gilles Wainrib , Eric Durand

Large Language Models (LLMs) have shown remarkable success in supporting a wide range of knowledge-intensive tasks. In specialized domains, there is growing interest in leveraging LLMs to assist subject matter experts with domain-specific…

Computation and Language · Computer Science 2025-12-01 Aman Kumar , Ekant Muljibhai Amin , Xian Yeow Lee , Lasitha Vidyaratne , Ahmed K. Farahat , Dipanjan D. Ghosh , Yuta Koreeda , Chetan Gupta

Mining large corpora can generate useful discoveries but is time-consuming for humans. We formulate a new task, D5, that automatically discovers differences between two large corpora in a goal-driven way. The task input is a problem…

Computation and Language · Computer Science 2023-10-26 Ruiqi Zhong , Peter Zhang , Steve Li , Jinwoo Ahn , Dan Klein , Jacob Steinhardt

Agentic reinforcement learning has advanced large language models (LLMs) to reason through long chain-of-thought trajectories while interleaving external tool use. Existing approaches assume a fixed inventory of tools, limiting LLM agents'…

Computation and Language · Computer Science 2025-12-16 Jiaru Zou , Ling Yang , Yunzhe Qi , Sirui Chen , Mengting Ai , Ke Shen , Jingrui He , Mengdi Wang

Scientific reasoning is critical for developing AI scientists and supporting human researchers in advancing the frontiers of natural science discovery. However, the open-source community has primarily focused on mathematics and coding while…

Computation and Language · Computer Science 2025-08-28 Run-Ze Fan , Zengzhi Wang , Pengfei Liu

Computer programming is a fundamental tool for life scientists, allowing them to carry out many essential research tasks. However, despite a variety of educational efforts, learning to write code can be a challenging endeavor for both…

Other Quantitative Biology · Quantitative Biology 2024-01-02 Stephen R. Piccolo , Paul Denny , Andrew Luxton-Reilly , Samuel Payne , Perry G. Ridge

Rapid advancements in large language models (LLMs) have the potential to assist in scientific progress. A critical capability toward this endeavor is the ability to reproduce existing work. To evaluate the ability of AI agents to reproduce…

Autonomous data science, from raw data sources to analyst-grade deep research reports, has been a long-standing challenge, and is now becoming feasible with the emergence of powerful large language models (LLMs). Recent workflow-based data…

Artificial Intelligence · Computer Science 2025-10-21 Shaolei Zhang , Ju Fan , Meihao Fan , Guoliang Li , Xiaoyong Du

With the rapid development of space exploration, space debris has attracted more attention due to its potential extreme threat, leading to the need for real-time and accurate debris tracking. However, existing methods are mainly based on…

Computer Vision and Pattern Recognition · Computer Science 2025-07-28 Guohang Zhuang , Weixi Song , Jinyang Huang , Chenwei Yang , Wanli OuYang , Yan Lu

Prediction for ADMET (Absorption, Distribution, Metabolism, Excretion, and Toxicity) plays a crucial role in drug discovery and development, accelerating the screening and optimization of new drugs. Existing methods primarily rely on…

Machine Learning · Computer Science 2025-09-08 Han Zhang , Fengji Ma , Jiamin Su , Xinyue Yang , Lei Wang , Wen-Cai Ye , Li Liu
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