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A central goal of interpretability is to recover representations of causally relevant concepts from the activations of neural networks. The quality of these concept representations is typically evaluated in isolation, and under implicit…

Machine Learning · Computer Science 2025-12-18 Aaron Mueller , Andrew Lee , Shruti Joshi , Ekdeep Singh Lubana , Dhanya Sridhar , Patrik Reizinger

Variational Autoencoders (VAEs) are powerful generative models for learning latent representations. Standard VAEs generate dispersed and unstructured latent spaces by utilizing all dimensions, which limits their interpretability, especially…

Computer Vision and Pattern Recognition · Computer Science 2025-05-21 Farshad Sangari Abiz , Reshad Hosseini , Babak N. Araabi

Sparse autoencoders (SAEs) are used to decompose neural network activations into sparsely activating features, but many SAE features are only interpretable at high activation strengths. To address this issue we propose to use binary sparse…

Machine Learning · Computer Science 2025-10-01 Lucia Quirke , Stepan Shabalin , Nora Belrose

Sparse autoencoders (SAEs) are used to disentangle the dense, polysemantic internal representations of large language models (LLMs) into interpretable, monosemantic concepts. However, standard $\ell_1$-regularized SAEs suffer from feature…

Machine Learning · Computer Science 2026-05-08 Faris Chaudhry , Keisuke Yano , Anthea Monod

Understanding and mitigating the potential risks associated with foundation models (FMs) hinges on developing effective interpretability methods. Sparse Autoencoders (SAEs) have emerged as a promising tool for disentangling FM…

Machine Learning · Computer Science 2024-11-04 Aashiq Muhamed , Mona Diab , Virginia Smith

EEG foundation models achieve state-of-the-art clinical performance, yet the internal computations driving their predictions remain opaque: a barrier to clinical trust. We apply TopK Sparse Autoencoders (SAEs) across three architecturally…

Deep learning weather prediction models achieve remarkable predictive skill yet remain largely opaque: we know little about how they represent physical climate phenomena internally. Mechanistic interpretability through Sparse Autoencoders…

Machine Learning · Computer Science 2026-05-19 Minjong Cheon

The ability of large language models (LLMs) to follow instructions is crucial for their practical applications, yet the underlying mechanisms remain poorly understood. This paper presents a novel framework that leverages sparse autoencoders…

Machine Learning · Computer Science 2025-02-18 Zirui He , Haiyan Zhao , Yiran Qiao , Fan Yang , Ali Payani , Jing Ma , Mengnan Du

As AI models achieve remarkable capabilities across diverse domains, understanding what representations they learn and how they encode concepts has become increasingly important for both scientific progress and trustworthy deployment.…

Machine Learning · Computer Science 2026-05-05 Yiming Tang , Harshvardhan Saini , Zhaoqian Yao , Zheng Lin , Yizhen Liao , Jingyi Cui , Yisen Wang , Mengnan Du , Dianbo Liu

Transformer models have become state-of-the-art in decoding stimuli and behavior from neural activity, significantly advancing neuroscience research. Yet greater transparency in their decision-making processes would substantially enhance…

Quantitative Methods · Quantitative Biology 2025-06-18 Laurence Freeman , Philip Shamash , Vinam Arora , Caswell Barry , Tiago Branco , Eva Dyer

We describe HypotheSAEs, a general method to hypothesize interpretable relationships between text data (e.g., headlines) and a target variable (e.g., clicks). HypotheSAEs has three steps: (1) train a sparse autoencoder on text embeddings to…

Computation and Language · Computer Science 2025-06-10 Rajiv Movva , Kenny Peng , Nikhil Garg , Jon Kleinberg , Emma Pierson

Sparse autoencoders (SAEs) offer a natural path toward comparable explanations across different representation spaces. However, current SAEs are trained per modality, producing dictionaries whose features are not directly understandable and…

Computer Vision and Pattern Recognition · Computer Science 2026-02-10 Difei Gu , Yunhe Gao , Gerasimos Chatzoudis , Zihan Dong , Guoning Zhang , Bangwei Guo , Yang Zhou , Mu Zhou , Dimitris Metaxas

Masked autoencoder (MAE), a simple and effective self-supervised learning framework based on the reconstruction of masked image regions, has recently achieved prominent success in a variety of vision tasks. Despite the emergence of…

Machine Learning · Computer Science 2023-06-09 Lingjing Kong , Martin Q. Ma , Guangyi Chen , Eric P. Xing , Yuejie Chi , Louis-Philippe Morency , Kun Zhang

While sparse autoencoders (SAEs) have generated significant excitement, a series of negative results have added to skepticism about their usefulness. Here, we establish a conceptual distinction that reconciles competing narratives…

Machine Learning · Computer Science 2025-07-01 Kenny Peng , Rajiv Movva , Jon Kleinberg , Emma Pierson , Nikhil Garg

Sparse autoencoders (SAEs) decompose large language model (LLM) activations into latent features that reveal mechanistic structure. Conventional SAEs train on broad data distributions, forcing a fixed latent budget to capture only…

Machine Learning · Computer Science 2025-08-14 Charles O'Neill , Mudith Jayasekara , Max Kirkby

Balancing predictive power and interpretability has long been a challenging research area, particularly in powerful yet complex models like neural networks, where nonlinearity obstructs direct interpretation. This paper introduces a novel…

Machine Learning · Computer Science 2025-02-20 Antoine Ledent , Peng Liu

While large language models provide strong compositional reasoning, existing reasoning segmentation pipelines fail to transparently connect this reasoning to visual perception. Current methods, such as latent query alignment, are end-to-end…

Computer Vision and Pattern Recognition · Computer Science 2026-05-22 Zhenyu Lu , Liupeng Li , Jinpeng Wang , Haoqian Kang , Yan Feng , Ke Chen , Yaowei Wang

We present the first systematic study of Sparse Autoencoders (SAEs) on video representations. Standard SAEs decompose video into interpretable, monosemantic features but destroy temporal coherence: hard TopK selection produces unstable…

Computer Vision and Pattern Recognition · Computer Science 2026-04-07 Atahan Dokme , Sriram Vishwanath

Recent work shows that Sparse Autoencoders (SAE) applied to large language model (LLM) layers have neurons corresponding to interpretable concepts. These SAE neurons can be modified to align generated outputs, but only towards…

Computation and Language · Computer Science 2025-07-01 Ananya Joshi , Celia Cintas , Skyler Speakman

Previous research on word embeddings has shown that sparse representations, which can be either learned on top of existing dense embeddings or obtained through model constraints during training time, have the benefit of increased…

Computation and Language · Computer Science 2018-09-26 Valentin Trifonov , Octavian-Eugen Ganea , Anna Potapenko , Thomas Hofmann