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The increasing availability of sensitive textual data has created an urgent need for robust de-identification methods that enable compliant data sharing while preserving downstream utility. This paper presents DeID-Clinic, a multi-layered…

Computation and Language · Computer Science 2026-05-26 Angel Paul , Dhivin Shaji , Lifeng Han , Warren Del-Pinto , Goran Nenadic , Suzan Verberne

Unstructured textual data is at the heart of healthcare systems. For obvious privacy reasons, these documents are not accessible to researchers as long as they contain personally identifiable information. One way to share this data while…

Cryptography and Security · Computer Science 2022-11-03 Yakini Tchouka , Jean-François Couchot , David Laiymani

AI-driven speech-to-text (STT) documentation systems are increasingly adopted in clinical settings to reduce documentation burden and improve workflow efficiency. However, adoption has outpaced systematic evaluation of socio-technical risks…

Human-Computer Interaction · Computer Science 2026-03-31 Nelly Elsayed

Data sharing is crucial for open science and reproducible research, but the legal sharing of clinical data requires the removal of protected health information from electronic health records. This process, known as de-identification, is…

Machine Learning · Computer Science 2024-01-04 Yuxin Xiao , Shulammite Lim , Tom Joseph Pollard , Marzyeh Ghassemi

Exploiting natural language processing in the clinical domain requires de-identification, i.e., anonymization of personal information in texts. However, current research considers de-identification and downstream tasks, such as concept…

Computation and Language · Computer Science 2020-05-20 Lukas Lange , Heike Adel , Jannik Strötgen

Unstructured textual data are at the heart of health systems: liaison letters between doctors, operating reports, coding of procedures according to the ICD-10 standard, etc. The details included in these documents make it possible to get to…

Cryptography and Security · Computer Science 2023-10-09 Yakini Tchouka , Jean-François Couchot , Maxime Coulmeau , David Laiymani , Philippe Selles , Azzedine Rahmani

Many models are pretrained on redacted text for privacy reasons. Clinical foundation models are often trained on de-identified text, which uses special syntax (masked) text in place of protected health information. Even though these models…

Computation and Language · Computer Science 2025-06-18 Paul Landes , Aaron J Chaise , Tarak Nath Nandi , Ravi K Madduri

Unstructured text from legal, medical, and administrative sources offers a rich but underutilized resource for research in public health and the social sciences. However, large-scale analysis is hampered by two key challenges: the presence…

Computation and Language · Computer Science 2025-07-16 Anders Ledberg , Anna Thalén

Use of medical data, also known as electronic health records, in research helps develop and advance medical science. However, protecting patient confidentiality and identity while using medical data for analysis is crucial. Medical data can…

Artificial Intelligence · Computer Science 2018-10-17 Vithya Yogarajan , Michael Mayo , Bernhard Pfahringer

Patient-controlled data-sharing systems are increasingly promoted as a way to empower patients with greater autonomy over their health data. Yet it remains unclear how different stakeholders, especially patients and health system leaders,…

Human-Computer Interaction · Computer Science 2026-03-30 Xi Lu , Di Hu , An T. Nguyen , Brad Morse , Lisa M. Schilling , Kai Zheng , Michelle S. Keller , Lucila Ohno-Machado , Yunan Chen

Recent research advances achieve human-level accuracy for de-identifying free-text clinical notes on research datasets, but gaps remain in reproducing this in large real-world settings. This paper summarizes lessons learned from building a…

Computation and Language · Computer Science 2023-12-15 Veysel Kocaman , Hasham Ul Haq , David Talby

For sharing privacy-sensitive data, de-identification is commonly regarded as adequate for safeguarding privacy. Synthetic data is also being considered as a privacy-preserving alternative. Recent successes with numerical and tabular data…

Computation and Language · Computer Science 2025-03-05 Atiquer Rahman Sarkar , Yao-Shun Chuang , Noman Mohammed , Xiaoqian Jiang

Effective healthcare delivery depends on accurate longitudinal health records and addressing patients' concerns regarding the privacy of their information. While patient authentication is essential, reusing patient identifiers exposes…

Cryptography and Security · Computer Science 2026-03-10 Nasif Muslim , Jean-Charles Grégoire

Background: Electronic health records (EHRs) are a valuable resource for data-driven medical research. However, the presence of protected health information (PHI) makes EHRs unsuitable to be shared for research purposes. De-identification,…

Computation and Language · Computer Science 2024-04-11 Aleksandar Kovačević , Bojana Bašaragin , Nikola Milošević , Goran Nenadić

De-identification is the task of detecting protected health information (PHI) in medical text. It is a critical step in sanitizing electronic health records (EHRs) to be shared for research. Automatic de-identification classifierscan…

Computation and Language · Computer Science 2019-06-13 Max Friedrich , Arne Köhn , Gregor Wiedemann , Chris Biemann

Large-scale clinical data is invaluable to driving many computational scientific advances today. However, understandable concerns regarding patient privacy hinder the open dissemination of such data and give rise to suboptimal siloed…

Computation and Language · Computer Science 2019-05-23 Oren Melamud , Chaitanya Shivade

Sharing clinical research data is key for increasing the pace of medical discoveries that improve human health. However, concern about study participants' privacy, confidentiality, and safety is a major factor that deters researchers from…

The digitization of healthcare has facilitated the sharing and re-using of medical data but has also raised concerns about confidentiality and privacy. HIPAA (Health Insurance Portability and Accountability Act) mandates removing…

With the aim of informing sound policy about data sharing and privacy, we describe successful re-identification of patients in an Australian de-identified open health dataset. As in prior studies of similar datasets, a few mundane facts…

Computers and Society · Computer Science 2017-12-18 Chris Culnane , Benjamin I. P. Rubinstein , Vanessa Teague

Free-text clinical notes detail all aspects of patient care and have great potential to facilitate quality improvement and assurance initiatives as well as advance clinical research. However, concerns about patient privacy and…

Computation and Language · Computer Science 2021-02-23 Nicholas Dobbins , David Wayne , Kahyun Lee , Özlem Uzuner , Meliha Yetisgen
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