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Tagging systems play an essential role in various information retrieval applications such as search engines and recommender systems. Recently, Large Language Models (LLMs) have been applied in tagging systems due to their extensive world…

Information Retrieval · Computer Science 2025-05-07 Ruiming Tang , Chenxu Zhu , Bo Chen , Weipeng Zhang , Menghui Zhu , Xinyi Dai , Huifeng Guo

Navigating the vast and rapidly growing body of scientific literature is a formidable challenge for aspiring researchers. Current approaches to supporting research idea generation often rely on generic large language models (LLMs). While…

Artificial Intelligence · Computer Science 2025-06-17 Franklin Lee , Tengfei Ma

Elucidating gene function is one of the ultimate goals of plant science. Despite this, only ~15% of all genes in the model plant Arabidopsis thaliana have comprehensively experimentally verified functions. While bioinformatical gene…

Molecular Networks · Quantitative Biology 2024-08-15 Rohan Shawn Sunil , Shan Chun Lim , Manoj Itharajula , Marek Mutwil

Preserving ancient languages is essential for understanding humanity's cultural and linguistic heritage, yet Old English remains critically under-resourced, limiting its accessibility to modern natural language processing (NLP) techniques.…

Computation and Language · Computer Science 2025-07-29 Rodrigo Gabriel Salazar Alva , Matías Nuñez , Cristian López , Javier Martín Arista

Pre-trained large language models(LLMs) have attracted increasing attention in biomedical domains due to their success in natural language processing. However, the complex traits and heterogeneity of multi-sources genomics data pose…

Computation and Language · Computer Science 2025-11-25 Yanjun Lyu , Zihao Wu , Lu Zhang , Jing Zhang , Yiwei Li , Wei Ruan , Zhengliang Liu , Zeyu Zhang , Xiang Li , Rongjie Liu , Chao Huang , Wentao Li , Tianming Liu , Dajiang Zhu

AI for Social Impact (AI4SI) has achieved compelling results in public health, conservation, and security, yet scaling these successes remains difficult due to a persistent deployment bottleneck. We characterize this bottleneck through…

Computers and Society · Computer Science 2026-01-09 Lingkai Kong , Cheol Woo Kim , Davin Choo , Milind Tambe

his paper explores what kinds of questions are best served by the way generative AI (GenAI) using Large Language Models(LLMs) that aggregate and package knowledge, and when traditional curated web-sourced search results serve users better.…

Human-Computer Interaction · Computer Science 2024-10-17 Ted Selker , Yunzi Wu

Retrieval augmented generation (RAG) has shown great power in improving Large Language Models (LLMs). However, most existing RAG-based LLMs are dedicated to retrieving single modality information, mainly text; while for many real-world…

Computation and Language · Computer Science 2025-06-09 Saptarshi Sengupta , Shuhua Yang , Paul Kwong Yu , Fali Wang , Suhang Wang

The increasing availability of large-scale datasets has fueled rapid progress across many scientific fields, creating unprecedented opportunities for research and discovery while posing significant analytical challenges. Recent advances in…

Artificial Intelligence · Computer Science 2025-12-01 Erzhuo Shao , Yifang Wang , Yifan Qian , Zhenyu Pan , Han Liu , Dashun Wang

Research funding discovery remains fundamentally fragmented: researchers navigate disparate agency portals (e.g., in the United States, NSF, NIH, DARPA, Grants.gov, and many others) with heterogeneous interfaces, search capabilities, and…

Artificial Intelligence · Computer Science 2026-05-05 Zhisheng Tang , Mayank Kejriwal

Deep learning-based AI models have been extensively applied in genomics, achieving remarkable success across diverse applications. As these models gain prominence, there exists an urgent need for interpretability methods to establish…

Genomics · Quantitative Biology 2025-05-16 Chenyu Wang , Chaoying Zuo , Zihan Su , Yuhang Xing , Lu Li , Maojun Wang , Zeyu Zhang

Crops, fisheries and livestock form the backbone of global food production, essential to feed the ever-growing global population. However, these sectors face considerable challenges, including climate variability, resource limitations, and…

Computer Vision and Pattern Recognition · Computer Science 2026-05-06 Umair Nawaz , Muhammad Zaigham Zaheer , Ufaq Khan , Fahad Shahbaz Khan , Hisham Cholakkal , Salman Khan , Rao Muhammad Anwer

Large language models (LLMs) have demonstrated significant potential to accelerate scientific discovery as valuable tools for analyzing data, generating hypotheses, and supporting innovative approaches in various scientific fields. In this…

Computation and Language · Computer Science 2025-10-30 Jin Huang , Silviu Cucerzan , Sujay Kumar Jauhar , Ryen W. White

LLM-based conversational AI agents struggle to maintain coherent behavior over long horizons due to limited context. While RAG-based approaches are increasingly adopted to overcome this limitation by storing interactions in external memory…

Artificial Intelligence · Computer Science 2026-05-13 Jiazhou Liang , Armin Toroghi , Yifan Simon Liu , Faeze Moradi Kalarde , Liam Gallagher , Scott Sanner

Artificial intelligence (AI) and large language models (LLM) are reshaping science, with most recent advances culminating in fully-automated scientific discovery pipelines. But qualitative research has been left behind. Researchers in…

Artificial Intelligence · Computer Science 2025-11-13 Stine Beltoft , Lukas Galke

Large language models (LLMs) are transforming the way information is retrieved with vast amounts of knowledge being summarized and presented via natural language conversations. Yet, LLMs are prone to highlight the most frequently seen…

Computation and Language · Computer Science 2024-02-20 Julien Delile , Srayanta Mukherjee , Anton Van Pamel , Leonid Zhukov

Hallucination is a key roadblock for applications of Large Language Models (LLMs), particularly for enterprise applications that are sensitive to information accuracy. To address this issue, two general approaches have been explored:…

Computation and Language · Computer Science 2024-10-15 Xinxi Chen , Li Wang , Wei Wu , Qi Tang , Yiyao Liu

High-quality, large-scale instructions are crucial for aligning large language models (LLMs), however, there is a severe shortage of instruction in the field of natural language understanding (NLU). Previous works on constructing NLU…

Computation and Language · Computer Science 2025-02-07 Lin Yuan , Jun Xu , Honghao Gui , Mengshu Sun , Zhiqiang Zhang , Lei Liang , Jun Zhou

Retrieval-augmented generation (RAG) has shown impressive capability in providing reliable answer predictions and addressing hallucination problems. A typical RAG implementation uses powerful retrieval models to extract external information…

Information Retrieval · Computer Science 2024-11-19 Ziwei Liu , Liang Zhang , Qian Li , Jianghua Wu , Guangxu Zhu

Foundation models, first introduced in 2021, refer to large-scale pretrained models (e.g., large language models (LLMs) and vision-language models (VLMs)) that learn from extensive unlabeled datasets through unsupervised methods, enabling…