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We applied machine learning methods to predict chemical hazards focusing on fish acute toxicity across taxa. We analyzed the relevance of taxonomy and experimental setup, showing that taking them into account can lead to considerable…

Quantitative Methods · Quantitative Biology 2022-05-09 Jimeng Wu , Simone D'Ambrosi , Lorenz Ammann , Julita Stadnicka-Michalak , Kristin Schirmer , Marco Baity-Jesi

Coarse-graining has become an area of tremendous importance within many different research fields. For molecular simulation, coarse-graining bears the promise of finding simplified models such that long-time simulations of large-scale…

Chemical Physics · Physics 2019-09-04 Feliks Nüske , Lorenzo Boninsegna , Cecilia Clementi

Manifold learning techniques play a pivotal role in machine learning by revealing lower-dimensional embeddings within high-dimensional data, thus enhancing both the efficiency and interpretability of data analysis by transforming the data…

Neural and Evolutionary Computing · Computer Science 2025-05-02 Ben Cravens , Andrew Lensen , Paula Maddigan , Bing Xue

This work considers the problem of learning the structure of multivariate linear tree models, which include a variety of directed tree graphical models with continuous, discrete, and mixed latent variables such as linear-Gaussian models,…

Machine Learning · Computer Science 2011-11-09 Animashree Anandkumar , Kamalika Chaudhuri , Daniel Hsu , Sham M. Kakade , Le Song , Tong Zhang

Structured pruning is an effective approach for compressing large pre-trained neural networks without significantly affecting their performance. However, most current structured pruning methods do not provide any performance guarantees, and…

Machine Learning · Computer Science 2023-02-14 Marwa El Halabi , Suraj Srinivas , Simon Lacoste-Julien

Deep neural networks and other sophisticated machine learning models are widely applied to biomedical signal data because they can detect complex patterns and compute accurate predictions. However, the difficulty of interpreting such models…

Signal Processing · Electrical Eng. & Systems 2021-07-12 Charmaine Chia , Matteo Sesia , Chi-Sing Ho , Stefanie S. Jeffrey , Jennifer Dionne , Emmanuel J. Candès , Roger T. Howe

We consider learning parameters of Binomial Hidden Markov Models, which may be used to model DNA methylation data. The standard algorithm for the problem is EM, which is computationally expensive for sequences of the scale of the mammalian…

Machine Learning · Computer Science 2018-02-08 Chicheng Zhang , Eran A. Mukamel , Kamalika Chaudhuri

Symbolic regression via genetic programming is a flexible approach to machine learning that does not require up-front specification of model structure. However, traditional approaches to symbolic regression require the use of protected…

Neural and Evolutionary Computing · Computer Science 2017-04-18 Grant Dick

We introduce Boolformer, a Transformer-based model trained to perform end-to-end symbolic regression of Boolean functions. First, we show that it can predict compact formulas for complex functions not seen during training, given their full…

Machine Learning · Computer Science 2025-07-18 Stéphane d'Ascoli , Arthur Renard , Vassilis Papadopoulos , Samy Bengio , Josh Susskind , Emmanuel Abbé

We propose a soft gradient boosting framework for sequential regression that embeds a learnable linear feature transform within the boosting procedure. At each boosting iteration, we train a soft decision tree and learn a linear input…

Machine Learning · Computer Science 2025-09-17 Huseyin Karaca , Suleyman Serdar Kozat

Symbolic regression algorithms search a space of mathematical expressions for formulas that explain given data. Transformer-based models have emerged as a promising, scalable approach shifting the expensive combinatorial search to a…

Machine Learning · Computer Science 2025-09-25 Henrik Voigt , Paul Kahlmeyer , Kai Lawonn , Michael Habeck , Joachim Giesen

The marine ecosystem is changing at an alarming rate, exhibiting biodiversity loss and the migration of tropical species to temperate basins. Monitoring the underwater environments and their inhabitants is of fundamental importance to…

Sound · Computer Science 2022-01-17 Michele Mancusi , Nicola Zonca , Emanuele Rodolà , Silvia Zuffi

Mathematical formulas serve as a language through which humans communicate with nature. Discovering mathematical laws from scientific data to describe natural phenomena has been a long-standing pursuit of humanity for centuries. In the…

Artificial Intelligence · Computer Science 2026-05-14 Yanjie Li , Liping Zhang , Min Wu , Weijun Li , Lina Yu , Jingyi Liu , Yusong Deng , Mingzhu Wan , Xin Ning

Recently, several algorithms for symbolic regression (SR) emerged which employ a form of multiple linear regression (LR) to produce generalized linear models. The use of LR allows the algorithms to create models with relatively small error…

Machine Learning · Computer Science 2017-03-13 Jan Žegklitz , Petr Pošík

Sparse regularized regression methods are now widely used in genome-wide association studies (GWAS) to address the multiple testing burden that limits discovery of potentially important predictors. Linear mixed models (LMMs) have become an…

Methodology · Statistics 2022-06-27 Julien St-Pierre , Karim Oualkacha , Sahir Rai Bhatnagar

We present a novel method for symbolic regression (SR), the task of searching for compact programmatic hypotheses that best explain a dataset. The problem is commonly solved using genetic algorithms; we show that we can enhance such methods…

Machine Learning · Computer Science 2024-12-11 Arya Grayeli , Atharva Sehgal , Omar Costilla-Reyes , Miles Cranmer , Swarat Chaudhuri

Neural network models of real-world systems, such as industrial processes, made from sensor data must often rely on incomplete data. System states may not all be known, sensor data may be biased or noisy, and it is not often known which…

Neural and Evolutionary Computing · Computer Science 2007-06-08 Donald A. Sofge , David L. Elliott

The typical methods for symbolic regression produce rather abrupt changes in solution candidates. In this work, we have tried to transform symbolic regression from an optimization problem, with a landscape that is so rugged that typical…

Machine Learning · Computer Science 2021-08-10 Erik Pitzer , Gabriel Kronberger

Controlling fish feeding machine is challenging problem because experienced fishermen can adequately control based on assumption. To build robust method for reasonable application, we propose automatic controlling fish feeding machine based…

Computer Vision and Pattern Recognition · Computer Science 2022-08-16 Hilmil Pradana , Keiichi Horio

Artificial intelligence techniques are increasingly being applied to solve control problems, but often rely on black-box methods without transparent output generation. To improve the interpretability and transparency in control systems,…

Neural and Evolutionary Computing · Computer Science 2025-06-11 Sigur de Vries , Sander Keemink , Marcel van Gerven
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