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The rise of electronic health records (EHRs) has unlocked new opportunities for medical research, but privacy regulations and data heterogeneity remain key barriers to large-scale machine learning. Federated learning (FL) enables…

Machine Learning · Computer Science 2025-05-27 Natallia Kokash , Lei Wang , Thomas H. Gillespie , Adam Belloum , Paola Grosso , Sara Quinney , Lang Li , Bernard de Bono

Large Language Models (LLMs) have demonstrated strong reasoning capabilities across various tasks. However, even minor variations in query phrasing, despite preserving the underlying semantic meaning, can significantly affect their…

Computation and Language · Computer Science 2025-02-26 Yihang Yao , Zhepeng Cen , Miao Li , William Han , Yuyou Zhang , Emerson Liu , Zuxin Liu , Chuang Gan , Ding Zhao

We tackle the challenge of integrating large language models (LLMs) with external recommender systems to enhance domain expertise in conversational recommendation (CRS). Current LLM-based CRS approaches primarily rely on zero/few-shot…

Information Retrieval · Computer Science 2026-03-31 Chuang Li , Weida Liang , Hengchang Hu , See-Kiong Ng , Min-Yen Kan , Haizhou Li , Yang Deng

Large Language Models (LLMs) have achieved remarkable success across a wide range of natural language tasks, and recent efforts have sought to extend their capabilities to multimodal domains and resource-constrained environments. However,…

Machine Learning · Computer Science 2025-05-26 Yun-Da Tsai

Radiology reports are often lengthy and unstructured, posing challenges for referring physicians to quickly identify critical imaging findings while increasing the risk of missed information. This retrospective study aimed to enhance…

Computation and Language · Computer Science 2025-06-05 Iryna Hartsock , Cyrillo Araujo , Les Folio , Ghulam Rasool

Reward models (RMs) have become essential for aligning large language models (LLMs), serving as scalable proxies for human evaluation in both training and inference. However, existing RMs struggle on knowledge-intensive and long-form tasks,…

Computation and Language · Computer Science 2025-10-30 Ziyou Hu , Zhengliang Shi , Minghang Zhu , Haitao Li , Teng Sun , Pengjie Ren , Suzan Verberne , Zhaochun Ren

Large language models (LLMs) in biomedicine face a fundamental conflict between static parameter knowledge and the dynamic nature of clinical evidence. Retrieval-Augmented Generation (RAG) addresses this by grounding generation in external…

Other Quantitative Biology · Quantitative Biology 2025-12-19 Jiawei He , Boya Zhang , Hossein Rouhizadeh , Yingjian Chen , Rui Yang , Jin Lu , Xudong Chen , Nan Liu , Douglas Teodoro

Large Language Models (LLMs) excel at understanding the semantic relationships between queries and documents, even with lengthy and complex long-tail queries. These queries are challenging for feedback-based rankings due to sparse user…

Large language models (LLMs) deliver impressive results but face challenges from increasing model sizes and computational costs. Structured pruning reduces model size and speeds up inference but often causes uneven degradation across…

Computation and Language · Computer Science 2025-05-28 Hexuan Deng , Wenxiang Jiao , Xuebo Liu , Jing Li , Min Zhang , Zhaopeng Tu

Retrieval augmentation is critical when Language Models (LMs) exploit non-parametric knowledge related to the query through external knowledge bases before reasoning. The retrieved information is incorporated into LMs as context alongside…

Information Retrieval · Computer Science 2024-11-21 Mingzhu Wang , Yuzhe Zhang , Qihang Zhao , Junyi Yang , Hong Zhang

The quickly-expanding nature of published medical literature makes it challenging for clinicians and researchers to keep up with and summarize recent, relevant findings in a timely manner. While several closed-source summarization tools…

Information Retrieval · Computer Science 2023-10-26 Alejandro Lozano , Scott L Fleming , Chia-Chun Chiang , Nigam Shah

Large language models (LLMs) can make predictions using parametric knowledge--knowledge encoded in the model weights--or contextual knowledge--knowledge presented in the context. In many scenarios, a desirable behavior is that LLMs give…

Computation and Language · Computer Science 2024-03-27 Yingfa Chen , Zhengyan Zhang , Xu Han , Chaojun Xiao , Zhiyuan Liu , Chen Chen , Kuai Li , Tao Yang , Maosong Sun

Standard reranking evaluations study how a reranker orders candidates returned by an upstream retriever. This setup couples ranking behavior with retrieval quality, so differences in output cannot be attributed to the ranking policy alone.…

Machine Learning · Computer Science 2026-02-24 Baris Arat , Emre Sefer

Background: Machine learning methods for clinical named entity recognition and entity normalization systems can utilize both labeled corpora and Knowledge Graphs (KGs) for learning. However, infrequently occurring concepts may have few…

Computation and Language · Computer Science 2024-10-11 Kuleen Sasse , Shinjitha Vadlakonda , Richard E. Kennedy , John D. Osborne

Large language models (LLMs) have recently become the leading source of answers for users' questions online. Despite their ability to offer eloquent answers, their accuracy and reliability can pose a significant challenge. This is…

Computation and Language · Computer Science 2024-07-09 Bojana Bašaragin , Adela Ljajić , Darija Medvecki , Lorenzo Cassano , Miloš Košprdić , Nikola Milošević

Large Language Models (LLMs) are adept at generating responses based on information within their context. While this ability is useful for interacting with structured data like code files, another popular method, Retrieval-Augmented…

Computation and Language · Computer Science 2025-10-22 Mihir Gupte , Paolo Giusto , Ramesh S

Building high-quality datasets and labeling query-document relevance are essential yet resource-intensive tasks, requiring detailed guidelines and substantial effort from human annotators. This paper explores the use of small, fine-tuned…

Information Retrieval · Computer Science 2025-04-15 Quentin Fitte-Rey , Matyas Amrouche , Romain Deveaud

Large Language Models (LLMs) have demonstrated remarkable adaptability, showcasing their capacity to excel in tasks for which they were not explicitly trained. However, despite their impressive natural language processing (NLP)…

Computation and Language · Computer Science 2023-09-08 Supun Manathunga , Isuru Hettigoda

The inherent complexity of structured longitudinal Electronic Health Records (EHR) data poses a significant challenge when integrated with Large Language Models (LLMs), which are traditionally tailored for natural language processing.…

Computation and Language · Computer Science 2024-02-13 Yinghao Zhu , Zixiang Wang , Junyi Gao , Yuning Tong , Jingkun An , Weibin Liao , Ewen M. Harrison , Liantao Ma , Chengwei Pan

Knowledge graphs and large language models (LLMs) are key tools for biomedical knowledge integration and reasoning, facilitating structured organization of scientific articles and discovery of complex semantic relationships. However,…

Computation and Language · Computer Science 2025-04-01 Yichun Feng , Jiawei Wang , Ruikun He , Lu Zhou , Yixue Li