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Volumetric cell segmentation in fluorescence microscopy images is important to study a wide variety of cellular processes. Applications range from the analysis of cancer cells to behavioral studies of cells in the embryonic stage. Like in…

Image and Video Processing · Electrical Eng. & Systems 2022-11-29 Royden Wagner , Karl Rohr

Image Segmentation is one of the core tasks in Computer Vision and solving it often depends on modeling the image appearance data via the color distributions of each it its constituent regions. Whereas many segmentation algorithms handle…

Computer Vision and Pattern Recognition · Computer Science 2025-02-06 Jeova Farias Sales Rocha Neto

Hyperspectral image analysis has become an important topic widely researched by the remote sensing community. Classification and segmentation of such imagery help understand the underlying materials within a scanned scene, since…

Computer Vision and Pattern Recognition · Computer Science 2020-12-02 Jakub Nalepa , Michal Myller , Yasuteru Imai , Ken-ichi Honda , Tomomi Takeda , Marek Antoniak

This paper presents a novel approach for segmenting moving objects in unconstrained environments using guided convolutional neural networks. This guiding process relies on foreground masks from independent algorithms (i.e. state-of-the-art…

Computer Vision and Pattern Recognition · Computer Science 2019-04-26 Diego Ortego , Kevin McGuinness , Juan C. SanMiguel , Eric Arazo , José M. Martínez , Noel E. O'Connor

Cell segmentation is essential in biomedical research for analyzing cellular morphology and behavior. Deep learning methods, particularly convolutional neural networks (CNNs), have revolutionized cell segmentation by extracting intricate…

Image and Video Processing · Electrical Eng. & Systems 2024-08-27 Boyuan Peng , Jiaju Chen , P. Bilha Githinji , Ijaz Gul , Qihui Ye , Minjiang Chen , Peiwu Qin , Xingru Huang , Chenggang Yan , Dongmei Yu , Jiansong Ji , Zhenglin Chen

This paper presents an unsupervised algorithm for nonlinear unmixing of hyperspectral images. The proposed model assumes that the pixel reflectances result from a nonlinear function of the abundance vectors associated with the pure spectral…

Machine Learning · Statistics 2015-06-05 Yoann Altmann , Nicolas Dobigeon , Steve McLaughlin , Jean-Yves Tourneret

Current biological and medical research is aimed at obtaining a detailed spatiotemporal map of a live cell's interior to describe and predict cell's physiological state. We present here an algorithm for complete 3-D modelling of cellular…

Quantitative Methods · Quantitative Biology 2017-04-03 Renata Rychtarikova , Tomas Nahlik , Kevin Shi , Daria Malakhova , Petr Machacek , Rebecca Smaha , Jan Urban , Dalibor Stys

Unsupervised localization and segmentation are long-standing computer vision challenges that involve decomposing an image into semantically-meaningful segments without any labeled data. These tasks are particularly interesting in an…

Computer Vision and Pattern Recognition · Computer Science 2022-05-17 Luke Melas-Kyriazi , Christian Rupprecht , Iro Laina , Andrea Vedaldi

Modeling the 3D structures of cells and tissues is crucial in biology. Sequential cross-sectional images from electron microscopy provide high-resolution intracellular structure information. The segmentation of complex cell structures…

Quantitative Methods · Quantitative Biology 2025-02-14 Jin Kousaka , Atsuko H. Iwane , Yuichi Togashi

Accurate automatic segmentation of brain anatomy from $T_1$-weighted~($T_1$-w) magnetic resonance images~(MRI) has been a computationally intensive bottleneck in neuroimaging pipelines, with state-of-the-art results obtained by unsupervised…

Computer Vision and Pattern Recognition · Computer Science 2018-08-01 Amod Jog , Bruce Fischl

The detection and segmentation of white blood cells in blood smear images is a key step in medical diagnostics, supporting various downstream tasks such as automated blood cell counting, morphological analysis, cell classification, and…

Computer Vision and Pattern Recognition · Computer Science 2025-08-19 Michael Deutges , Chen Yang , Raheleh Salehi , Nassir Navab , Carsten Marr , Ario Sadafi

A robust and efficient anomaly detection technique is proposed, capable of dealing with crowded scenes where traditional tracking based approaches tend to fail. Initial foreground segmentation of the input frames confines the analysis to…

Computer Vision and Pattern Recognition · Computer Science 2013-04-04 Vikas Reddy , Conrad Sanderson , Brian C. Lovell

The throughput of electron microscopes has increased significantly in recent years, enabling detailed analysis of cell morphology and ultrastructure. Analysis of neural circuits at single-synapse resolution remains the flagship target of…

Computer Vision and Pattern Recognition · Computer Science 2019-08-07 Constantin Pape , Alex Matskevych , Adrian Wolny , Julian Hennies , Giula Mizzon , Marion Louveaux , Jacob Musser , Alexis Maizel , Detlev Arendt , Anna Kreshuk

Artificial intelligence is nowadays used for cell detection and classification in optical microscopy, during post-acquisition analysis. The microscopes are now fully automated and next expected to be smart, to make acquisition decisions…

Unsupervised panoptic segmentation aims to partition an image into semantically meaningful regions and distinct object instances without training on manually annotated data. In contrast to prior work on unsupervised panoptic scene…

Computer Vision and Pattern Recognition · Computer Science 2025-11-12 Oliver Hahn , Christoph Reich , Nikita Araslanov , Daniel Cremers , Christian Rupprecht , Stefan Roth

In image processing, a segmentation is a process of partitioning an image into multiple sets of pixels, that are defined as super-pixels. Each super-pixel is characterized by a label or parameter. Here, we are proposing a method for…

Computer Vision and Pattern Recognition · Computer Science 2016-12-06 Amelia Carolina Sparavigna

Accurately counting cells in microscopic images is important for medical diagnoses and biological studies, but manual cell counting is very tedious, time-consuming, and prone to subjective errors, and automatic counting can be less accurate…

Computer Vision and Pattern Recognition · Computer Science 2019-03-25 Shenghua He , Kyaw Thu Minn , Lilianna Solnica-Krezel , Mark Anastasio , Hua Li

Size uniformity is one of the main criteria of superpixel methods. But size uniformity rarely conforms to the varying content of an image. The chosen size of the superpixels therefore represents a compromise - how to obtain the fewest…

Computer Vision and Pattern Recognition · Computer Science 2016-11-29 Radhakrishna Achanta , Pablo Márquez-Neila , Pascal Fua , Sabine Süsstrunk

Unsupervised video object segmentation has often been tackled by methods based on recurrent neural networks and optical flow. Despite their complexity, these kinds of approaches tend to favour short-term temporal dependencies and are thus…

Computer Vision and Pattern Recognition · Computer Science 2019-10-25 Zhao Yang , Qiang Wang , Luca Bertinetto , Weiming Hu , Song Bai , Philip H. S. Torr

In the recent advancement of multimedia technologies, it becomes a major concern of detecting visual attention regions in the field of image processing. The popularity of the terminal devices in a heterogeneous environment of the multimedia…

Computer Vision and Pattern Recognition · Computer Science 2012-06-19 Koushik Mondal , Paramartha Dutta , Siddhartha Bhattacharyya