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Motivation: Many inference tools use the Perfect Phylogeny Model (PPM) to learn trees from noisy variant allele frequency (VAF) data. Learning in this setting is hard, and existing tools use approximate or heuristic algorithms. An…

Quantitative Methods · Quantitative Biology 2019-08-26 Surjyendu Ray , Bei Jia , Sam Safavi , Tim van Opijnen , Ralph Isberg , Jason Rosch , José Bento

A plethora of problems in AI, engineering and the sciences are naturally formalized as inference in discrete probabilistic models. Exact inference is often prohibitively expensive, as it may require evaluating the (unnormalized) target…

Machine Learning · Computer Science 2019-10-16 Lars Buesing , Nicolas Heess , Theophane Weber

Let R^d -> A be a query problem over R^d for which there exists a data structure S that can compute P(q) in O(log n) time for any query point q in R^d. Let D be a probability measure over R^d representing a distribution of queries. We…

Computational Geometry · Computer Science 2010-02-08 Prosenjit Bose , Luc Devroye , Karim Douieb , Vida Dujmovic , James King , Pat Morin

This paper presents an efficient algorithm for retrieving from a database of trees, all trees that match a given query tree approximately, that is, within a certain error tolerance. It has natural language processing applications in…

cmp-lg · Computer Science 2008-02-03 Kemal Oflazer

Quartet Reconstruction, the task of recovering a phylogenetic tree from smaller trees on four species called \textit{quartets}, is a well-studied problem in theoretical computer science with far-reaching connections to statistics, graph…

Data Structures and Algorithms · Computer Science 2026-04-21 Dionysis Arvanitakis , Vaggos Chatziafratis , Yiyuan Luo , Konstantin Makarychev

Partially observable Markov decision processes (POMDPs) are a natural model for planning problems where effects of actions are nondeterministic and the state of the world is not completely observable. It is difficult to solve POMDPs…

Artificial Intelligence · Computer Science 2009-09-25 N. L. Zhang , W. Liu

One obstacle that so far prevents the introduction of machine learning models primarily in critical areas is the lack of explainability. In this work, a practicable approach of gaining explainability of deep artificial neural networks (NN)…

Machine Learning · Computer Science 2019-10-07 Nina Schaaf , Marco F. Huber , Johannes Maucher

We study contextual stochastic optimization problems, where we leverage rich auxiliary observations (e.g., product characteristics) to improve decision making with uncertain variables (e.g., demand). We show how to train forest decision…

Optimization and Control · Mathematics 2022-03-17 Nathan Kallus , Xiaojie Mao

The problem of selecting small groups of itemsets that represent the data well has recently gained a lot of attention. We approach the problem by searching for the itemsets that compress the data efficiently. As a compression technique we…

Data Structures and Algorithms · Computer Science 2019-02-08 Nikolaj Tatti , Jilles Vreeken

We develop an randomized approximation algorithm for the size of set union problem $\arrowvert A_1\cup A_2\cup...\cup A_m\arrowvert$, which given a list of sets $A_1,...,A_m$ with approximate set size $m_i$ for $A_i$ with $m_i\in…

Data Structures and Algorithms · Computer Science 2018-06-18 Bin Fu , Pengfei Gu , Yuming Zhao

Optimal transport (OT) serves as a natural framework for comparing probability measures, with applications in statistics, machine learning, and applied mathematics. Alas, statistical estimation and exact computation of the OT distances…

Statistics Theory · Mathematics 2024-05-14 Tao Wang , Ziv Goldfeld

The minimum degree algorithm is one of the most widely-used heuristics for reducing the cost of solving large sparse systems of linear equations. It has been studied for nearly half a century and has a rich history of bridging techniques…

Data Structures and Algorithms · Computer Science 2023-04-11 Robert Cummings , Matthew Fahrbach , Animesh Fatehpuria

We present a new approximation algorithm for the treewidth problem which finds an upper bound on the treewidth and constructs a corresponding tree decomposition as well. Our algorithm is a faster variation of Reed's classical algorithm. For…

Data Structures and Algorithms · Computer Science 2022-06-24 Mahdi Belbasi , Martin Fürer

We introduce the model selection problem in pure exploration linear bandits, where the learner needs to adapt to the instance-dependent complexity measure of the smallest hypothesis class containing the true model. We design algorithms in…

Machine Learning · Statistics 2022-03-18 Yinglun Zhu , Julian Katz-Samuels , Robert Nowak

We give a quasipolynomial-time algorithm for learning stochastic decision trees that is optimally resilient to adversarial noise. Given an $\eta$-corrupted set of uniform random samples labeled by a size-$s$ stochastic decision tree, our…

Machine Learning · Computer Science 2021-05-11 Guy Blanc , Jane Lange , Li-Yang Tan

Approximate Pattern Matching is among the most fundamental string-processing tasks. Given a text $T$ of length $n$, a pattern $P$ of length $m$, and a threshold $k$, the task is to identify the fragments of $T$ that are at distance at most…

Data Structures and Algorithms · Computer Science 2024-10-10 Tomasz Kociumaka , Jakob Nogler , Philip Wellnitz

When, in terms of the number of data points, the size of a dataset exceeds available computing resources, or when labeling is expensive, an attractive solution consists of selecting only some of the data points (subdata) for further…

Methodology · Statistics 2026-04-28 Min Yang , Wei Zheng , John Stufken , Ming-Chung Chang , Ting Tian , Xueqin Wang

The EM (Expectation-Maximization) algorithm is regarded as an MM (Majorization-Minimization) algorithm for maximum likelihood estimation of statistical models. Expanding this view, this paper demonstrates that by choosing an appropriate…

Optimization and Control · Mathematics 2026-02-12 Kensuke Asai , Jun-ya Gotoh

We study the problem of entrywise $\ell_1$ low rank approximation. We give the first polynomial time column subset selection-based $\ell_1$ low rank approximation algorithm sampling $\tilde{O}(k)$ columns and achieving an…

Data Structures and Algorithms · Computer Science 2020-11-17 Arvind V. Mahankali , David P. Woodruff

Search engines answer users' queries by listing relevant items (e.g. documents, songs, products, web pages, ...). These engines rely on algorithms that learn to rank items so as to present an ordered list maximizing the probability that it…

Machine Learning · Computer Science 2021-09-14 Stefan Magureanu , Alexandre Proutiere , Marcus Isaksson , Boxun Zhang